Gossypium hirsutum (upland cotton): 107931226
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Entry
107931226 CDS
T04793
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107931226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107931226
03009 Ribosome biogenesis [BR:
ghi03009
]
107931226
04131 Membrane trafficking [BR:
ghi04131
]
107931226
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107931226
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
107931226
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
107931226
Membrane trafficking [BR:
ghi04131
]
SNARE
SNARE associated proteins
Others
107931226
Autophagy
Aggrephagy
Other aggrephagy associated proteins
107931226
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
107931226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
AAA_18
AAA_28
nSTAND3
RNA_helicase
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
Viral_helicase1
Parvo_NS1
ABC_tran
Zeta_toxin
AAA_7
NACHT
NB-ARC
TsaE
AAA_24
DUF815
Vps4_C
Sigma54_activ_2
ATP-synt_ab
Rad17
UFD1
KAP_NTPase
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
107931226
NCBI-ProteinID:
XP_016718529
UniProt:
A0A1U8LZ31
LinkDB
All DBs
Position
A04:65794531..65799185
Genome browser
AA seq
805 aa
AA seq
DB search
MSNQAESSDSKGAKKDFSTAILERKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLFGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNTKLAEDVDLERISKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPIAKEVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDVEDEVAEIKPAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAE
TGSRTAASDPFAAAAGGADEDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaagctgagtcctctgactcgaagggggctaagaaggattttagtacggcg
atcttggaaagaaagaaggcagcaaatcgactcgttgttgatgaggcaatcaacgatgat
aactctgttgtttctcttcatcctgataccatggaaaagcttcagctgtttcgcggtgac
actattctcatcaagggaaagaaaaggaaagatactatctgcattgctctggcagatgac
acatgtgatgaacctaagatcaggatgaataaggttgtcaggtcaaacttgagagttagg
cttggtgatgttgtctctgtgcatcagtgtccagatgttaagtatggaaaacgtgtgcac
atcttgcctgtggatgacacaattgaaggggttactggaaatctctttgatgcttacctg
aaaccttactttctggaagcctaccgcccagtgaggaagggtgatctcttccttgtgagg
gggggaatgagaagtgtagaattcaaggttattgagactgaccctccagagtattgtgtg
gttgcaccagacactgagatattctgtgaaggagagcctgttaagagggaggatgagaat
agattagatgaggtgggttatgatgatgttggtggagtgagaaaacagatggctcagatt
cgggaactagtggagcttccattgaggcatccacagttatttaaatcaattggcgtgaag
ccacctaaaggaatcttgctttttggacctcctggatctggaaagactttgattgcccgt
gcagttgcaaatgaaactggtgctttctttttttgcatcaacggtcctgagatcatgtca
aaattggccggggagagtgaaagcaatcttagaaaagcttttgaggaagcagagaagaat
gcaccatctattatattcattgatgaaattgattcaattgctccgaagagagagaagaca
catggtgaagttgagaggagaattgtctctcagctgttgacattgatggatggtcttaaa
tcccgtgcacatgttattgttattggggccacaaatcgtcccaatagcattgatcctgct
cttagaaggtttggaagatttgatagggagattgatattggtgtccctgatgaagttggc
cgtcttgaggtgctccgtatccacaccaagaacacgaagctggctgaagatgttgattta
gaaagaatttccaaggagacacatggctatgttggtgctgatctcgcagctctctgtacg
gaggcagcgttacagtgcatcagggaaaagatggatgtgattgacttggaagatgagaca
atagatgctgagatactcaactctatggcagtctcaaatgagcacttccagactgctctt
ggaacaagcaatccatcagccctgcgtgaaactgttgttgaagtacctaacgtcagttgg
gaagatattggaggcctcgagaatgttaaaagggagcttcaagagactgttcaatatcct
gtggagcatcctgaaaaatttgagaagttcgggatgtcaccctcaaagggagtactattc
tatggccctccaggatgtgggaaaacccttttggccaaagctattgccaatgagtgtcag
gcaaacttcatcagtgtcaagggtccagaattactaacaatgtggttcggagagagtgag
gccaatgtgagggaaatttttgacaaggctcgccagtctgctccttgtgtcctgttcttt
gatgaacttgattcaattgctacccagagaggaagcagcgtgggtgatgcagggggtgct
gctgatagggttttgaaccaacttcttactgagatggatggcatgtctgcgaagaaaact
gttttcatcattggagccaccaaccgacctgatattatagatccagcacttctgcgtcca
ggtcgtcttgatcagttgatctatattcctctccctgacgaggattctcgccatcagatt
tttaaggcttgcttgaggaaatcaccaattgcaaaagaggttgacctcagagctcttgcc
aaatatactcaagggtttagtggggctgatatcacagaaatttgccaacgagcatgtaaa
tatgccataagagaaaacattgaaaaggatattgagagagaaaggagaagaagtgagaac
cctgaagctatggaggaagatgttgaggatgaagtggcagaaatcaagcctgcacatttt
gaggaatcaatgaagtttgctcgtaggagtgtgagcgatgctgacatccgcaaataccaa
gcatttgctcaaacattgcagcagtcgaggggatttggaagtgaatttaggttcgctgaa
actggttccaggactgcagcctctgatccttttgctgctgctgctggaggagctgatgaa
gatgacctttacagttaa
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integrated database retrieval system