KEGG   Gossypium hirsutum (upland cotton): 107939460
Entry
107939460         CDS       T04793                                 
Name
(RefSeq) protein CHROMATIN REMODELING 5
  KO
K11367  chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107939460
   03036 Chromosome and associated proteins [BR:ghi03036]
    107939460
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     107939460
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     107939460
    SLIK complex
     107939460
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C Chromo CHD1-like_C HDA2-3 ResIII DEAD SWI2_SNF2
Other DBs
NCBI-GeneID: 107939460
NCBI-ProteinID: XP_016728283
UniProt: A0A1U8MNA0
LinkDB
Position
A13:complement(110130034..110143300)
AA seq 1774 aa
MACFRNYSNDTISHDALEGKSQGRNSGRILSSAENEDIDGTYSEREFDINMDAQYQSDGV
GISNSEQSRLHHEVATDNGAGISNSNFQPAGRRIAPGRWGSTFWKDCQPMDRQGGSDSGQ
ESKSDHKNLEGSVYNSSDDRDDRLESEVDEAQKEVGKSQRGHSDVPADEMLSDEYYEQDG
EEQSDTMHYSGFGNSVGLNTRPQSKHVSVSTNVSRSSRALNKRNYDNEDDNDDNNDDVDA
DYEEEEEEDEDDPDDVDFEPDYGLANSHAGNKDKDWDGEDSEEEDNRHGDLDVSDEDDSY
YKKKPKGRQQIKVGPNVKPTREHKSSNRQRRGRSSFEEDEYSAEDSDSESDGDFKSMARR
SGNNHKINARSNTLTSMGRNNEVRTSGRSVRKVSYVESEESEEIDEGKKKKTRKDEAEEE
DGDTIEKVLWHQPKGMAEDAIRNNRSTEPVLLSHLFVSEPDWSEMEFLIKWKGQSHLHCQ
WKSISELQNLSGFKKVLNYTKKVMEDVRYRKSLSREEIEVNDVSKEMDLDLIKQNSQVER
VIVDRISKDAFGNVMSEYLVKWQGLSYAEATWEKDIDIPFAQDAIDEYKAREAAMAVQGK
MVDHQRKKGKASLRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKT
VQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQ
YEFYNDKKIGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLS
EFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKNKDDFVQNYKNLSSFNEIELANLHM
ELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSL
LNIVVELKKCCNHPFLFESADHGYGGDTGMNDISKLERIILSSGKLVILDKLLMRLHETK
HRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLST
RAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILE
RAKKKMVLDHLVIQKLNAEGRLERKETKKGAYFDKNELSAILRFGAEELFKEDKNDEESK
KRLLSMDIDEILERAEKVEEKVSEEEGNELLSAFKVANFCSAEDDGSFWSRWIKPDAIAQ
AEDALAPRAARNTKSYAETSQPERSNKRKKKGSDLQEQQERVPKRRKAEYSAPSAPMIEG
ATAQVRGWSYGNLPKRDALRFSRAVMKFGNESQVTLIAEEVGGAVAAAPLDAQIELFNAL
VEGCREAVELGNIEPKGPLLDFFGVPVKANDLINRVQELQLLAKRISRYEDPIKQFRVLM
YLKPSNWSKGCGWNQIDDARLLLGIYYHGFGNWEKIRLDERLGLTKKIAPAELQHHETFL
PRAPNLKERANALLEMELAAVGGKNAGVKAGRKPSKKEKQNPLNVSISHVRDKKGKPGST
KVSFKMGRDKTERPQKVEPLVKEEGEMSDNEEVYEQFKEVKWMEWCEDVMIDEIKTLRRL
QRLQTTSADLPKDKVLSKIRNYLQLLGRRIDQIVLEHEDELYRQDRMTMRLWNYVSTFSN
LSGERLHQIYSKLKQEQDDDGGVGPSHMNGSTPGHVDRDGDPNFFPPFSRSTDKQRGYKK
NATAHQTSQPIHKGIDTAKFEAWKRWRAETVNHPQLQPPTQRPLNNGSTRVVDPNSLGIL
GAGPSDKRLVNTERPFRMRQTGFPQRQGFPSGIK
NT seq 5325 nt   +upstreamnt  +downstreamnt
atggcatgttttagaaactactcaaatgacacaatctcacatgatgccttggaaggcaaa
agccagggacggaacagtggtaggattctgagctcagcagagaacgaggacatagatggt
acttatagtgaaagagaatttgatattaacatggatgcacagtatcaaagtgatggggtt
ggcatttcaaattcagagcagagtaggctgcatcatgaggtggctactgataatggtgct
ggcatttcaaattccaattttcagccagcaggaaggagaatagcacctgggagatggggt
tcaactttttggaaggactgccagcctatggatcgccagggtggatctgattctgggcag
gagtcaaaatctgaccataagaatttggaaggttcagtatataattcatcagatgacagg
gatgataggttagaatcagaagttgacgaggcacaaaaagaagttggcaagtctcaaagg
ggtcattctgatgtccctgcagatgagatgttatctgatgaatactatgaacaggatggg
gaagagcagagtgatacaatgcattacagtggctttggcaattctgtcgggttaaatact
aggccacagtcaaagcatgtttctgtcagtaccaatgtgtccaggagttcaagagcattg
aataagcgtaactatgacaatgaagatgataatgacgacaacaatgatgatgtagatgca
gattatgaagaggaggaagaagaagatgaagatgaccctgatgatgtcgattttgagcct
gactatggtcttgccaattctcatgcagggaataaggataaagactgggatggtgaagat
tctgaggaagaagacaataggcatggtgatttagatgtttcagatgaagatgattcttat
tataaaaagaaacctaaaggtaggcaacagattaaagttggacctaatgtaaaacccact
agagaacataagtcctccaatcgacaaagaagagggagatcatcttttgaggaggatgag
tactcagccgaggattctgatagtgaaagcgatggggatttcaagagtatggcaaggaga
agtggaaataatcataaaattaatgctcgttctaatacattgacaagcatgggaagaaac
aatgaggttcgtacttctggtaggtctgttcggaaagtatcatatgttgagagtgaagaa
agtgaagaaattgatgaaggcaagaaaaaaaagacacgaaaggatgaagctgaagaggaa
gatggtgacacaattgaaaaagtgttatggcatcaaccaaagggcatggctgaagatgct
attagaaacaatagatctacagagcctgttttattaagccacttgtttgtctctgaacca
gattggagcgaaatggaattcctgataaaatggaaagggcagtcacatcttcattgtcag
tggaaatctatttctgagctgcaaaaccttagtggttttaagaaggttctaaattacact
aaaaaggtgatggaggatgtgagatacaggaagtcactttcacgtgaggagattgaagtc
aatgatgtgagtaaggaaatggacttggatctaatcaagcaaaatagtcaggtggagaga
gtaattgttgatcgaatcagtaaagatgcctttgggaatgtgatgtcagagtatttagtc
aagtggcagggattgtcttatgcagaagcaacctgggaaaaggatattgatattccattt
gctcaagatgctattgatgagtataaggctcgtgaagctgcaatggctgtgcaggggaaa
atggtagatcaccagcgtaagaagggaaaagcaagtttgcggaaacttgatgaacagcca
gaatggttaaggggaggaaagcttcgtgattatcagctggagggtttgaattttcttgtc
aacagttggagaaatgatactaatgtcatcttagctgatgagatgggtcttggtaaaact
gtgcagtctgtatctatgcttggttttctacagaatgctcaacaaatacccggcccgttt
cttgtggtcgtaccattatccacactgtcaaactgggctaaagaatttagaaagtggctt
cctgatatgaacattattgtatatgttggtactcgtgccagccgagaggtttgtcagcaa
tatgaattttacaatgacaagaaaattggcagacctataaaatttaatgccctgctgact
acttatgaagtagttctgaaggataaagcagtactgtctaagataaaatggaactatttg
atggttgacgaagctcataggttgaagaatagtgaggcgcagttgtacacaactctttcg
gaatttagcactaagaacaagttgctaattactggaactccattacaaaacagtgtggag
gagctatgggctctgcttcatttccttgatcccgacaagttcaaaaataaggatgatttt
gttcaaaattacaagaatcttagttcgtttaatgaaattgagcttgctaatcttcacatg
gaattgaggcctcacattcttcgaagggttatcaaagatgtagagaagtctttgcctcca
aaaattgagcgtatccttagggttgagatgtccccacttcagaaacagtattataagtgg
attttggaacgcaacttccatgacttaaataaaggtgttcgtggcaatcaggtgtcgctt
ttaaatatagtagtcgagctgaagaaatgctgcaatcatcccttcctgtttgaaagtgct
gatcatggttatggtggggacactggcatgaatgatattagtaaactggagagaattata
ttaagcagtgggaagcttgttatacttgacaagttgcttatgaggttgcatgaaacgaag
catcgtgttttaatcttttcccagatggttagaatgctggatatattagccgagtacatg
tcactcagagggttccaattccagaggcttgatggtagtacaaaggcggagttgcggcag
caggctatggatcatttcaatgcacctggaagtgatgatttttgcttccttctttctact
cgggctggtgggctcggtatcaacctggcaactgcagacactgtcataatatttgattct
gactggaacccccagaatgacttacaggcaatgagtagagctcacagaattgggcaacaa
gaagttgtcaacatttacagatttgtgacaagcaaaagtgttgaggaagacatcctggag
cgagctaagaagaagatggtgcttgaccatttggtgatccaaaagttaaatgcagagggt
agactggagagaaaggaaacaaagaaaggggcttattttgacaagaatgaattatcagca
attttgagatttggagctgaagaattgttcaaagaggataaaaatgatgaagaaagcaaa
aaaaggctgttaagtatggatattgatgaaattcttgaaagagcagaaaaggttgaggag
aaagtcagtgaagaggaagggaatgaattgttgagtgcttttaaggttgcaaatttctgt
agtgctgaagatgatgggtctttctggagtcgttggataaaaccagatgccattgcccaa
gcagaagatgctctagctcctcgtgctgcaagaaataccaagagttatgctgagacaagt
caacctgagagaagtaacaaaagaaagaagaagggatctgatcttcaagagcagcaggag
agagttccaaagcgccgtaaagcagaatactctgccccctcggcaccaatgattgaggga
gcaactgctcaagtgagaggatggtcttatgggaatttgcctaagagagatgcattgcgt
ttttctcgagcggttatgaaattcgggaatgagagccaagtcactttgatagcagaggaa
gttggtggtgctgttgcagcagctccacttgatgcgcagattgagctcttcaatgcgcta
gttgaaggatgcagggaagctgttgaattaggaaatatagaacctaagggaccattatta
gatttctttggtgttcctgttaaggcaaatgatctgattaatcgtgtccaagaacttcag
ctcttagcaaaacgaataagtcgatacgaggatcccataaaacagttccgtgtgttgatg
taccttaaaccctctaattggtctaaagggtgtgggtggaatcagattgatgatgcaaga
ttgcttctgggaatatactaccatggatttggtaattgggaaaagataagattagatgaa
aggcttggcctcacaaagaagattgctcctgccgaacttcagcaccatgaaacctttctg
ccacgtgcacctaatttgaaggagcgtgctaatgcactcttggaaatggaacttgcagct
gttggtggtaagaatgctggtgtcaaagctggtcgtaaaccttcaaagaaggaaaagcag
aatcctctaaacgtatctatatctcatgtcagagacaagaaaggtaaaccgggttctact
aaggtgagttttaaaatgggtagggacaaaaccgagagaccacagaaagttgaaccttta
gttaaagaagaaggtgaaatgtctgacaacgaggaagtatatgagcagtttaaggaagtg
aagtggatggaatggtgtgaagatgttatgattgatgaaataaaaacccttcgtcggctc
caaagattgcagactactagtgcagatcttcccaaggataaggtactttcgaaaattcgg
aactatttgcagcttcttggaaggaggatagatcaaattgtcttagaacatgaagacgag
ctctatagacaagatcggatgaccatgcgtttatggaactatgtctctacattttcaaat
ctttctggtgagaggcttcatcagatttattcgaagcttaagcaggaacaggacgatgat
ggaggtgttggaccttcccatatgaacggttccacacctggccatgttgatagagacggt
gatcctaatttcttccctcctttttcacgttctaccgataagcaacgagggtataagaag
aatgcaacggcacatcaaacatcacaaccgattcataaaggcatcgataccgcaaagttt
gaagcttggaaacgatggagagcagaaacggttaaccatcctcaacttcaacccccaact
caaagacctctgaacaatggtagtactcgtgtagtagacccaaactcattggggattctt
ggggcaggaccatctgataaacgtcttgttaataccgaacggccatttcggatgcgtcaa
actggatttccacaaaggcaaggttttccctcaggcatcaagtaa

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