Gossypium hirsutum (upland cotton): 107939460
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Entry
107939460 CDS
T04793
Name
(RefSeq) protein CHROMATIN REMODELING 5
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107939460
03036 Chromosome and associated proteins [BR:
ghi03036
]
107939460
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
107939460
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
107939460
SLIK complex
107939460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
107939460
NCBI-ProteinID:
XP_016728283
UniProt:
A0A1U8MNA0
LinkDB
All DBs
Position
A13:complement(110130034..110143300)
Genome browser
AA seq
1774 aa
AA seq
DB search
MACFRNYSNDTISHDALEGKSQGRNSGRILSSAENEDIDGTYSEREFDINMDAQYQSDGV
GISNSEQSRLHHEVATDNGAGISNSNFQPAGRRIAPGRWGSTFWKDCQPMDRQGGSDSGQ
ESKSDHKNLEGSVYNSSDDRDDRLESEVDEAQKEVGKSQRGHSDVPADEMLSDEYYEQDG
EEQSDTMHYSGFGNSVGLNTRPQSKHVSVSTNVSRSSRALNKRNYDNEDDNDDNNDDVDA
DYEEEEEEDEDDPDDVDFEPDYGLANSHAGNKDKDWDGEDSEEEDNRHGDLDVSDEDDSY
YKKKPKGRQQIKVGPNVKPTREHKSSNRQRRGRSSFEEDEYSAEDSDSESDGDFKSMARR
SGNNHKINARSNTLTSMGRNNEVRTSGRSVRKVSYVESEESEEIDEGKKKKTRKDEAEEE
DGDTIEKVLWHQPKGMAEDAIRNNRSTEPVLLSHLFVSEPDWSEMEFLIKWKGQSHLHCQ
WKSISELQNLSGFKKVLNYTKKVMEDVRYRKSLSREEIEVNDVSKEMDLDLIKQNSQVER
VIVDRISKDAFGNVMSEYLVKWQGLSYAEATWEKDIDIPFAQDAIDEYKAREAAMAVQGK
MVDHQRKKGKASLRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKT
VQSVSMLGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQ
YEFYNDKKIGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLS
EFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKNKDDFVQNYKNLSSFNEIELANLHM
ELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSL
LNIVVELKKCCNHPFLFESADHGYGGDTGMNDISKLERIILSSGKLVILDKLLMRLHETK
HRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLST
RAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILE
RAKKKMVLDHLVIQKLNAEGRLERKETKKGAYFDKNELSAILRFGAEELFKEDKNDEESK
KRLLSMDIDEILERAEKVEEKVSEEEGNELLSAFKVANFCSAEDDGSFWSRWIKPDAIAQ
AEDALAPRAARNTKSYAETSQPERSNKRKKKGSDLQEQQERVPKRRKAEYSAPSAPMIEG
ATAQVRGWSYGNLPKRDALRFSRAVMKFGNESQVTLIAEEVGGAVAAAPLDAQIELFNAL
VEGCREAVELGNIEPKGPLLDFFGVPVKANDLINRVQELQLLAKRISRYEDPIKQFRVLM
YLKPSNWSKGCGWNQIDDARLLLGIYYHGFGNWEKIRLDERLGLTKKIAPAELQHHETFL
PRAPNLKERANALLEMELAAVGGKNAGVKAGRKPSKKEKQNPLNVSISHVRDKKGKPGST
KVSFKMGRDKTERPQKVEPLVKEEGEMSDNEEVYEQFKEVKWMEWCEDVMIDEIKTLRRL
QRLQTTSADLPKDKVLSKIRNYLQLLGRRIDQIVLEHEDELYRQDRMTMRLWNYVSTFSN
LSGERLHQIYSKLKQEQDDDGGVGPSHMNGSTPGHVDRDGDPNFFPPFSRSTDKQRGYKK
NATAHQTSQPIHKGIDTAKFEAWKRWRAETVNHPQLQPPTQRPLNNGSTRVVDPNSLGIL
GAGPSDKRLVNTERPFRMRQTGFPQRQGFPSGIK
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atggcatgttttagaaactactcaaatgacacaatctcacatgatgccttggaaggcaaa
agccagggacggaacagtggtaggattctgagctcagcagagaacgaggacatagatggt
acttatagtgaaagagaatttgatattaacatggatgcacagtatcaaagtgatggggtt
ggcatttcaaattcagagcagagtaggctgcatcatgaggtggctactgataatggtgct
ggcatttcaaattccaattttcagccagcaggaaggagaatagcacctgggagatggggt
tcaactttttggaaggactgccagcctatggatcgccagggtggatctgattctgggcag
gagtcaaaatctgaccataagaatttggaaggttcagtatataattcatcagatgacagg
gatgataggttagaatcagaagttgacgaggcacaaaaagaagttggcaagtctcaaagg
ggtcattctgatgtccctgcagatgagatgttatctgatgaatactatgaacaggatggg
gaagagcagagtgatacaatgcattacagtggctttggcaattctgtcgggttaaatact
aggccacagtcaaagcatgtttctgtcagtaccaatgtgtccaggagttcaagagcattg
aataagcgtaactatgacaatgaagatgataatgacgacaacaatgatgatgtagatgca
gattatgaagaggaggaagaagaagatgaagatgaccctgatgatgtcgattttgagcct
gactatggtcttgccaattctcatgcagggaataaggataaagactgggatggtgaagat
tctgaggaagaagacaataggcatggtgatttagatgtttcagatgaagatgattcttat
tataaaaagaaacctaaaggtaggcaacagattaaagttggacctaatgtaaaacccact
agagaacataagtcctccaatcgacaaagaagagggagatcatcttttgaggaggatgag
tactcagccgaggattctgatagtgaaagcgatggggatttcaagagtatggcaaggaga
agtggaaataatcataaaattaatgctcgttctaatacattgacaagcatgggaagaaac
aatgaggttcgtacttctggtaggtctgttcggaaagtatcatatgttgagagtgaagaa
agtgaagaaattgatgaaggcaagaaaaaaaagacacgaaaggatgaagctgaagaggaa
gatggtgacacaattgaaaaagtgttatggcatcaaccaaagggcatggctgaagatgct
attagaaacaatagatctacagagcctgttttattaagccacttgtttgtctctgaacca
gattggagcgaaatggaattcctgataaaatggaaagggcagtcacatcttcattgtcag
tggaaatctatttctgagctgcaaaaccttagtggttttaagaaggttctaaattacact
aaaaaggtgatggaggatgtgagatacaggaagtcactttcacgtgaggagattgaagtc
aatgatgtgagtaaggaaatggacttggatctaatcaagcaaaatagtcaggtggagaga
gtaattgttgatcgaatcagtaaagatgcctttgggaatgtgatgtcagagtatttagtc
aagtggcagggattgtcttatgcagaagcaacctgggaaaaggatattgatattccattt
gctcaagatgctattgatgagtataaggctcgtgaagctgcaatggctgtgcaggggaaa
atggtagatcaccagcgtaagaagggaaaagcaagtttgcggaaacttgatgaacagcca
gaatggttaaggggaggaaagcttcgtgattatcagctggagggtttgaattttcttgtc
aacagttggagaaatgatactaatgtcatcttagctgatgagatgggtcttggtaaaact
gtgcagtctgtatctatgcttggttttctacagaatgctcaacaaatacccggcccgttt
cttgtggtcgtaccattatccacactgtcaaactgggctaaagaatttagaaagtggctt
cctgatatgaacattattgtatatgttggtactcgtgccagccgagaggtttgtcagcaa
tatgaattttacaatgacaagaaaattggcagacctataaaatttaatgccctgctgact
acttatgaagtagttctgaaggataaagcagtactgtctaagataaaatggaactatttg
atggttgacgaagctcataggttgaagaatagtgaggcgcagttgtacacaactctttcg
gaatttagcactaagaacaagttgctaattactggaactccattacaaaacagtgtggag
gagctatgggctctgcttcatttccttgatcccgacaagttcaaaaataaggatgatttt
gttcaaaattacaagaatcttagttcgtttaatgaaattgagcttgctaatcttcacatg
gaattgaggcctcacattcttcgaagggttatcaaagatgtagagaagtctttgcctcca
aaaattgagcgtatccttagggttgagatgtccccacttcagaaacagtattataagtgg
attttggaacgcaacttccatgacttaaataaaggtgttcgtggcaatcaggtgtcgctt
ttaaatatagtagtcgagctgaagaaatgctgcaatcatcccttcctgtttgaaagtgct
gatcatggttatggtggggacactggcatgaatgatattagtaaactggagagaattata
ttaagcagtgggaagcttgttatacttgacaagttgcttatgaggttgcatgaaacgaag
catcgtgttttaatcttttcccagatggttagaatgctggatatattagccgagtacatg
tcactcagagggttccaattccagaggcttgatggtagtacaaaggcggagttgcggcag
caggctatggatcatttcaatgcacctggaagtgatgatttttgcttccttctttctact
cgggctggtgggctcggtatcaacctggcaactgcagacactgtcataatatttgattct
gactggaacccccagaatgacttacaggcaatgagtagagctcacagaattgggcaacaa
gaagttgtcaacatttacagatttgtgacaagcaaaagtgttgaggaagacatcctggag
cgagctaagaagaagatggtgcttgaccatttggtgatccaaaagttaaatgcagagggt
agactggagagaaaggaaacaaagaaaggggcttattttgacaagaatgaattatcagca
attttgagatttggagctgaagaattgttcaaagaggataaaaatgatgaagaaagcaaa
aaaaggctgttaagtatggatattgatgaaattcttgaaagagcagaaaaggttgaggag
aaagtcagtgaagaggaagggaatgaattgttgagtgcttttaaggttgcaaatttctgt
agtgctgaagatgatgggtctttctggagtcgttggataaaaccagatgccattgcccaa
gcagaagatgctctagctcctcgtgctgcaagaaataccaagagttatgctgagacaagt
caacctgagagaagtaacaaaagaaagaagaagggatctgatcttcaagagcagcaggag
agagttccaaagcgccgtaaagcagaatactctgccccctcggcaccaatgattgaggga
gcaactgctcaagtgagaggatggtcttatgggaatttgcctaagagagatgcattgcgt
ttttctcgagcggttatgaaattcgggaatgagagccaagtcactttgatagcagaggaa
gttggtggtgctgttgcagcagctccacttgatgcgcagattgagctcttcaatgcgcta
gttgaaggatgcagggaagctgttgaattaggaaatatagaacctaagggaccattatta
gatttctttggtgttcctgttaaggcaaatgatctgattaatcgtgtccaagaacttcag
ctcttagcaaaacgaataagtcgatacgaggatcccataaaacagttccgtgtgttgatg
taccttaaaccctctaattggtctaaagggtgtgggtggaatcagattgatgatgcaaga
ttgcttctgggaatatactaccatggatttggtaattgggaaaagataagattagatgaa
aggcttggcctcacaaagaagattgctcctgccgaacttcagcaccatgaaacctttctg
ccacgtgcacctaatttgaaggagcgtgctaatgcactcttggaaatggaacttgcagct
gttggtggtaagaatgctggtgtcaaagctggtcgtaaaccttcaaagaaggaaaagcag
aatcctctaaacgtatctatatctcatgtcagagacaagaaaggtaaaccgggttctact
aaggtgagttttaaaatgggtagggacaaaaccgagagaccacagaaagttgaaccttta
gttaaagaagaaggtgaaatgtctgacaacgaggaagtatatgagcagtttaaggaagtg
aagtggatggaatggtgtgaagatgttatgattgatgaaataaaaacccttcgtcggctc
caaagattgcagactactagtgcagatcttcccaaggataaggtactttcgaaaattcgg
aactatttgcagcttcttggaaggaggatagatcaaattgtcttagaacatgaagacgag
ctctatagacaagatcggatgaccatgcgtttatggaactatgtctctacattttcaaat
ctttctggtgagaggcttcatcagatttattcgaagcttaagcaggaacaggacgatgat
ggaggtgttggaccttcccatatgaacggttccacacctggccatgttgatagagacggt
gatcctaatttcttccctcctttttcacgttctaccgataagcaacgagggtataagaag
aatgcaacggcacatcaaacatcacaaccgattcataaaggcatcgataccgcaaagttt
gaagcttggaaacgatggagagcagaaacggttaaccatcctcaacttcaacccccaact
caaagacctctgaacaatggtagtactcgtgtagtagacccaaactcattggggattctt
ggggcaggaccatctgataaacgtcttgttaataccgaacggccatttcggatgcgtcaa
actggatttccacaaaggcaaggttttccctcaggcatcaagtaa
DBGET
integrated database retrieval system