KEGG   Gossypium hirsutum (upland cotton): 107949789
Entry
107949789         CDS       T04793                                 
Name
(RefSeq) histone deacetylase 5 isoform X1
  KO
K11406  histone deacetylase 4/5 [EC:3.5.1.98]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ghi03036]
    107949789
Enzymes [BR:ghi01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107949789
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     107949789
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 107949789
NCBI-ProteinID: XP_016740036
UniProt: A0A1U8NLZ0
LinkDB
Position
D03:38964303..38973977
AA seq 667 aa
MMEEGSGGGRSNYNRMNDAKNERRVGLIYDQRMCKHRTPYGDDHPEKPDRITVIWNKLEL
AGIPQRCVILNAKEAKDEYICAVHSKNHVNLIRNISSKEYSKRNRIASKLNSIYLNEGSS
ESAYLAAGSVIEVAEKVAKGELNSAFAIVRPPGHHAEYDEAMGFCLFNNIAIAASFLLDQ
RPELGINKILIVDWDVHHGNGTQKTFWSDPRVLFFSVHRHEFGRFYPANFDGFYTMVGEG
PGAGYNINVPWENGRCGDADYLAVWDHVLVPVAKEFNPDIILVSAGFDAAFGDPLGGCRL
TPHGYSVLLKKLMDFAQGRIVLALEGGYNLDSLANSALACMEVLLEDKPISELSEAYPFE
STWRVIQAVRQMLSAYWPTLADKLPTKLTDQKAPPHILLSSSESDDEDDDASKIISKDLV
QAVEDVVEPILNLKIEDYHGNEVKNEVNSALWRSKLSKTDIWYAGFGSNMWKSRFLCYIE
GGQVIGMKKLCSGSVDRNPPKETRWKTFPHRLFFGRDFTQTWGPGGVAFLDPRSNSEDKA
YMCLYKITLEQFNDVLLQENVPDHDMNSPLFDLNALDSILNEGSIPVEAVKRGWYHNVVY
LGMEDDIPILTMTCPLSAMESFKSGEIPLCAPSKDYADTLVRGLVEGKQLSEEEATTYIQ
VASTKPL
NT seq 2004 nt   +upstreamnt  +downstreamnt
atgatggaggagggatcaggtgggggcaggagtaactacaaccgcatgaacgatgccaaa
aatgaacggcgggtaggcttaatttacgatcagaggatgtgtaagcatcgaactccttat
ggcgatgatcatcccgagaaacctgatcgaatcactgttatatggaacaagcttgaactc
gccggcattccgcaaagatgtgtgattttaaatgcaaaagaagccaaggatgaatatatt
tgcgctgttcactccaaaaaccatgttaatctgattcgaaatataagctccaaagagtat
tcaaagcgaaatcggattgcttccaagttaaattctatatatttgaatgaaggatcatca
gagtctgcataccttgcagccggctctgtcattgaggttgctgagaaagtggcaaaaggg
gaattgaattctgcttttgctattgttaggccacctggacatcatgctgaatatgatgaa
gcaatggggttttgtttattcaacaatatagccatagcagcaagttttctacttgatcaa
aggcctgaacttggtataaacaagattttgatagttgattgggatgttcatcatggtaat
ggtactcaaaaaactttttggagtgatcctcgtgttcttttcttttctgttcacagacat
gagtttggtaggttttaccctgctaattttgatgggttttacaccatggttggagaaggg
ccaggtgcaggatataatataaatgtcccttgggagaatggccgctgtggggatgctgac
tatctagcagtttgggaccatgttttagttcctgttgctaaggaatttaatcctgacata
attctagtgtctgcagggtttgatgcagcttttggtgatcctctagggggatgtcggtta
acacctcatggatattcagttttgttgaagaagttgatggattttgctcaaggtaggatt
gtcttggcactagaaggaggatacaatcttgattctcttgcaaattcagccttagcttgc
atggaagttttgttagaagacaaacctatttccgaattgtctgaggcatatccatttgag
tctacatggcgcgtaatacaagcggttcgtcagatgttgagtgcatactggccaacatta
gcagataaactgccaacaaaattgactgatcaaaaagctcctcctcatattttactatca
agctctgaatctgatgatgaggatgatgatgcttcgaaaatcatttcaaaagatctagtt
caagctgttgaggatgttgtagaacccattttgaatttgaagattgaagattatcatggt
aatgaagtgaagaatgaagtaaatagtgccctgtggagatcaaagctatccaagactgac
atttggtatgccggtttcggatcaaatatgtggaagtcaaggttcctctgctatattgaa
ggtggacaggtcataggcatgaaaaagctgtgttctggttctgtggatagaaaccctcca
aaggagactcgctggaaaacttttcctcatcgtcttttctttggtcgtgattttacacaa
acttggggtcccggaggggttgctttccttgatcctcgaagcaacagtgaagataaagca
tacatgtgcctctataagatcacgttagagcagttcaatgatgttctgctgcaggaaaat
gttcctgatcatgacatgaattctcctttatttgatctaaatgctttagactctatactc
aatgaaggttcaattcctgtggaggctgtcaagagaggttggtaccataatgttgtctac
cttggaatggaggatgatatacctatactgactatgacgtgtcccctctctgcgatggaa
agctttaagtcgggagagattcctttatgtgctcctagcaaagattatgctgacacctta
gtaagaggccttgttgaaggcaaacaactttcggaagaggaggcgacaacttacattcag
gtggcatccaccaaacccttatga

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