Guyparkeria halophila: GM160_05900
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Entry
GM160_05900 CDS
T06369
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ghl
Guyparkeria halophila
Pathway
ghl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GM160_05900 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghl03400
]
GM160_05900 (recB)
Enzymes [BR:
ghl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GM160_05900 (recB)
DNA repair and recombination proteins [BR:
ghl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GM160_05900 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QGT78472
UniProt:
A0A6I6DA95
LinkDB
All DBs
Position
complement(1275355..1279164)
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AA seq
1269 aa
AA seq
DB search
MNELDPITFPLQGSRLIEASAGTGKTFTISLLYLRLVLGHRGPEQRHARPLTPPEILVST
FTEAAVAELRDRIRSRLQQAAWLFAGTRDEHEVDQPLRDLYDEFDADERARGAFLLQRAA
EWMDEAAIFTIHGFCQRQLAEHAFHSGALFEQELITDLDPLIHVAVRDFWRTHGYPLTTR
ESLARQFARLVDTPGALKEKVRNLIKRDGSQLAVGEITAGSTGELPSPAELLDRLSVAQE
RADTAEGRAREAWLADIDTLHGLWNGVRPGLSKTSHAEAKTEDTFAAWLAGVDDWAAGTG
TLGEPDRKKLARPSTNKGHEPPEHPALDAIGDWHAALARLDEQVDEIKPTVQAFAALWIR
ERIASLLASRRAMGFEDMLIQMRDAVDPERNPNARGMIEAIRSQYPVAMIDEFQDTDPLQ
YAIFSAVYPLGAETPASDEHAIVLIGDPKQAIYSFRGADIHSYLTARRATAGRHASLPCN
FRSTDAMVSAVNAMFSVADEHPDGAFRFPLDGGASPLPFEPVKAQGRDDRLVDRGGELPA
VTLWASPPDEVWTSGAFRDALAVRAAGEIAALLNRGQSGSCGFQGDGALRGIEPRDIAVL
VRTQDEGKLMRRALADFGVPAVFLSERSSVFASTEAADMLVWLEALAEPARSDRIRQALA
TASMALPLAELEALLRDETQFDAICQRFHEWHRTWQSQGVLAAIMGLLHHFSIPARLLET
DARQNRRGERRLTNLLHLAEWLQQTDQNVDGETALLHRLHLAVTEGAAEQEIRLEQDNAM
VRIVTIHGSKGLQYPVVFLPFIALLGADTHRRGEPTRRHRDDGSVWEMAPTKEANAEAAQ
EAIAESIRLFYVAITRAEYACVLGAGPVKFGNAKAFNPGKTAFGQFLGFSPDETCDRPGY
LDKLARWAEHAAIEIVDLPEPLDPRHHRFTPPPEPALHGPRIPHFEAFEPWWISSFSALT
ASIGHRVPLPAPEGAREEVRLESQAEAFTRAQPTADHAVTARTDLGPTGLRTDLVPIGIH
ALPRGAQIGTLLHDLIEAIAADGFRHHAQRPGSIARLISRTSHPGLRSLDEAQVDVVARS
LETLLASRWRMPTGGELALAETTRYQAEMEFWLAVDDADLAPLDRLVCDHVAPGRPRPPL
SGPAVNGMLKGFIDLALERDGRYYVIDWKSNWLGPDAAAYTPEALEQAMLDSRYDLQFVL
YLVALHRHLRDRLPDYDYDRHVGGAAYVFLRGIEAATDAPDNAGVYTCRPDRVLIESLDR
LFAGEEVAA
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacttgatccgatcacctttcccctgcaaggcagtcggctgatcgaggccagt
gcgggcaccggcaagaccttcaccatctcgctgctctacctgcgcctggtactgggccac
cgcggacccgagcaacgccacgcgcgtccgctcaccccgccggaaatcctggtcagcacc
ttcaccgaggcggcggtcgccgaactgcgtgaccggattcgcagccgcctgcaacaggcc
gcctggctgtttgcgggcacccgtgatgagcacgaggtcgaccaacccctgcgcgacctg
tacgacgagttcgatgccgacgagcgcgcccgcggcgccttcctgctgcaacgagccgcc
gaatggatggacgaggcggccatcttcaccatccacgggttctgccaacgacagctggcc
gagcacgccttccacagcggcgccctgttcgagcaggagctgatcaccgacctcgacccc
ctgatccacgtggcggtgcgcgatttctggcgcacgcacggctacccattgaccacgagg
gaatctctcgcccggcagttcgcccgcctggtcgacacgccgggggcgctcaaggagaag
gtacgcaacctgatcaagcgcgacggcagccagcttgccgtcggcgagatcacggccggg
tccaccggggagctgccctcacccgccgagctactcgatcgactgtccgtcgcacaagag
cgcgcggacacggccgagggccgggcgcgcgaggcctggctcgccgatatcgacaccctg
cacgggttgtggaacggcgtgcgtccggggttgagcaagacgagtcacgccgaggccaag
acggaagacacgttcgcggcgtggcttgccggtgtcgacgactgggctgccggtaccgga
acgcttggcgaaccagaccggaagaagctcgcgcgcccgtcaaccaacaagggccacgaa
ccgcccgagcacccggcgctggatgccatcggcgactggcacgccgcccttgcccgcctg
gacgagcaagtcgacgagatcaagcccaccgtccaggccttcgccgcgctgtggatacgc
gaacgcatcgcgagcctgctggccagccgccgcgcgatgggcttcgaggacatgctgatc
cagatgcgcgatgcggtcgacccggagcgaaacccaaacgcccggggcatgatcgaggcg
atccgttcccagtatccggtcgcgatgatcgacgaattccaggacaccgatccgctgcaa
tacgcgatcttctcggccgtctacccgctcggggcggaaacgcccgcctcggacgagcac
gccatcgtgctgatcggcgatcccaagcaggcgatctacagctttcgcggcgcggacatc
cacagctacctcaccgcgcggcgagcaacggccggacgacacgcgagcctgccctgcaac
ttccgctcgaccgacgccatggtcagcgcggtcaacgcgatgttctcggtggccgatgaa
caccccgacggcgcgtttcgcttccccctcgatggcggggcatcgcccctgccgttcgag
ccggtcaaggcccagggacgcgacgaccgcctggtcgaccggggcggtgaactgcccgcc
gtgacgttgtgggcatcgcctcccgacgaggtctggaccagcggcgccttccgcgacgcg
ctggccgtccgggcggccggggaaatcgccgcactgctcaatcgcggccagtcgggcagc
tgcggctttcaaggcgacggcgcactgcgcgggatcgagccacgcgatatcgccgtgctg
gtacgaacgcaggacgaaggcaagctgatgcgccgggcactggccgacttcggcgtgccg
gccgtgttcctgtccgagcgctcctcggtgttcgcctcgaccgaggcggccgacatgctc
gtgtggctggaggcacttgccgagccggcgcgcagcgaccggatccgccaggcgctggcc
acggccagcatggctctgccgctcgcggaactggaagccctcctgcgcgacgagacccaa
ttcgacgccatctgccagcgattccacgaatggcaccggacctggcaatcccagggcgtg
ctcgccgcgatcatgggcctgttgcaccatttctccatcccggctcgtctgctcgagacc
gacgcacgccagaaccgccgcggcgagcgccgactgaccaacctgctgcacctggccgaa
tggctgcaacagaccgaccagaacgtcgacggcgagaccgccctgctccaccgcctgcac
ctggccgtgaccgagggggccgccgagcaggagatccgcctggagcaggacaacgccatg
gtgcggatcgtgaccatccacgggtcgaagggcctgcagtacccagtggtgttcctgccg
ttcatcgccctgctcggcgcggacacgcatcgccgcggcgaaccgacccgccgtcaccgc
gacgatggctcggtctgggagatggcgccgacgaaggaggcgaacgcggaggccgcccag
gaggcgatcgccgagtccatccggctgttctacgtggccataacccgggcggagtacgcc
tgtgtgctcggtgccgggccggtcaagttcggtaacgccaaggcgttcaaccccggcaag
acggccttcgggcaattcctcggcttttcacccgacgagacctgcgaccgccccggctac
ctcgacaagctcgctcgctgggccgagcacgcagcgatcgagatcgtggacctgcccgag
ccgctcgatcctcgccaccatcgcttcacgccaccgccggaaccggcgcttcacggccct
cggataccgcatttcgaggcgttcgaaccgtggtggatctcgagcttctcggcgctgacc
gcctcgatcggccaccgggtgcccctccccgccccggagggcgcgcgcgaggaagtgcgt
ctcgaatcgcaggcggaggcattcacccgggcccagccgaccgcggatcacgcggtgacg
gccaggacagacctcgggccaacgggtctccgtaccgacctggtgccgatcggcatccac
gcgctgccacgcggggcgcagatcggcaccctgctgcacgacctgatcgaggcgattgcc
gccgacggctttcgtcatcacgcccagcgcccgggatcgatcgcccgtctgatctcgcgc
acgtcccacccggggctgcgatcactcgacgaggcgcaggtcgatgttgtcgcgcggagt
ctcgagaccctgctggccagccgctggcggatgccgaccggcggggagctggcgctggcc
gaaacgacccgataccaggccgaaatggaattctggctggccgtcgacgacgccgatctc
gcgccgctcgaccgactcgtgtgcgaccacgtcgcgccgggccggccgcgaccgcccctg
tccgggccggccgtcaacggcatgctcaagggctttatcgatctcgccctcgagcgcgac
ggccggtattacgtgatcgactggaaatccaactggctgggtccggatgcggccgcctac
acgcccgaggcactggaacaggccatgctcgactcgcgctacgacctgcaattcgtcctg
tacctggtggccctgcatcgccacctgcgcgatcggttgccggactacgactacgaccgc
cacgtgggcggggcggcctacgtgttcctgcgcgggatcgaggcggccaccgacgccccc
gacaacgccggcgtctacacctgccggccggaccgcgtcctgatcgagtcgctcgaccgg
ctgtttgccggcgaggaggtcgcggcatga
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