Guyparkeria halophila: GM160_10055
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Entry
GM160_10055 CDS
T06369
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ghl
Guyparkeria halophila
Pathway
ghl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM160_10055 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghl03019
]
GM160_10055 (rnr)
03016 Transfer RNA biogenesis [BR:
ghl03016
]
GM160_10055 (rnr)
Enzymes [BR:
ghl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GM160_10055 (rnr)
Messenger RNA biogenesis [BR:
ghl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GM160_10055 (rnr)
Transfer RNA biogenesis [BR:
ghl03016
]
Prokaryotic type
tRNA degradation factors
GM160_10055 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QGT79203
UniProt:
A0A6I6D5B0
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All DBs
Position
complement(2235203..2237623)
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AA seq
806 aa
AA seq
DB search
MTDSNLEDPNAPREAEKYDNPVASREFLLELLGKQDGPITLNKLISELGYDGDEERIEGL
RRRLRAMERDGQAIRNRRGGYVPVTKAELVRGRVIGHRDGFGFLVPDEGGNDVFLSPRVM
RALLHGDRAVVQVVGEDRRGRPEGALVEVIERANAEVVGRLVIEAGVAFVIPDNKRMTQD
VLVPMEALAGATDGQIVRVALVEQPTQRHKPVGKVVEVLGAHMSPGMEIDVAIRAHGIPH
EWPEPVQRHVEGMSDQVAEEDKIGRVDLRDVPLVTIDGSDSKDLDDAVFCEPTPKGFRLL
VAIADVSHYVRIGSALDEEGFRRATSVYFPGRVVPMLPEILSNGLCSVNPDVDRLCLCAE
MLINGQGQIIRSRFFEGVMRSHARLTYDSVAAMLLDNDQAEREKYSHVIKPVEALHDLYK
VLRAERESRGAIDFDTIETKIVFGENRKIEAIVPYERNDAHKIIEECMIAANVAAGRFLA
RRKIPSLYRVHDRPGAEKIDDLRAALKEKGLTLGGGEKPTPADFNALIEEAKGRPDFATV
QTLLLRSLQQAVYAPDNLGHFGLAHEHYAHFTSPIRRYPDLMVHRAIRHVLRTGAADNFP
YSQEEMVLIGEHCSNNERRADEATRDATDWLKCEFMLDKVGNVYEGRVAFVLGFGLFVEL
KDFFVEGLLHITALKRDFYHFDPVSVSLKGERSGKTYSLNDTIRVRVARVDLDERKIDFM
LPEDEEGTGDDESGRDEGKSPKGAGESDDGASTDEGNGGGKKRRPRRRRRKPKGDGNAEQ
GEGQSGGESGDKRPGKGDDSAATPTD
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattcaaacctcgaagacccgaacgccccgcgcgaggccgagaaatacgacaac
cccgtcgccagccgcgagttcctgctcgagctcttgggcaagcaggacgggccgatcacg
ctcaacaagctgatcagcgagctcggctacgacggtgacgaggagcgcatcgaaggcctg
cgccgtcgcctgcgggccatggagcgcgacggccaggccatccgcaaccgccgcggcggc
tacgtgccggtgaccaaggccgagctggtgcgcggccgggtgatcggccatcgcgacggc
ttcggcttcctggtgccggacgagggcggcaacgacgtgttcctctcgccgcgcgtcatg
cgtgccctgctgcacggcgaccgtgccgtggtgcaggtggtcggcgaggatcgtcgcggc
cggcccgagggtgcgctggtcgaggtgatcgagcgggccaacgccgaggtcgtcggtcgg
ctggtgatcgaggccggcgtggccttcgtcatccccgacaacaagcgcatgacccaggac
gtgctggtcccgatggaagcgctggccggcgcgaccgacggacagatcgtccgcgtcgcc
ttggtcgagcagcccacccagcggcacaagccggtcggcaaggtcgtcgaggtgttgggc
gcccacatgtcgccgggcatggagatcgacgtcgctatccgcgcccacggcatcccccac
gagtggcccgagccggttcagcgccacgtcgagggcatgagcgaccaggtcgccgaggaa
gacaagatcggccgggtcgacctgcgtgacgtgccgctggtcaccatcgacggctcggat
tccaaggacctcgacgacgcggtcttctgcgagcccacccccaaggggttccgcctgctg
gtggcgatcgccgacgtctcgcactacgtgcgcatcggctcggcactcgacgaggaaggc
ttccgtcgcgcgacctccgtgtacttcccggggcgcgtggtgccgatgctccccgagatc
ctctccaacggcctgtgctcggtgaacccggacgtcgatcgcctctgcctgtgcgccgag
atgctgatcaacggccagggccagatcatccgctcgcgctttttcgagggcgtgatgcga
agccacgcgcgcctgacctacgacagcgtcgcggccatgctgctcgacaacgaccaggcc
gagcgcgagaagtacagccacgtcatcaagccggtcgaggcgctgcacgacctctacaag
gtgctgcgcgccgagcgcgaatcgcgcggggcgatcgacttcgacaccatcgagaccaag
atcgtcttcggtgagaaccgcaagatcgaggcgatcgtgccctacgagcgcaacgacgcg
cacaagatcatcgaggaatgcatgatcgcggcgaacgtggccgccggtcgcttcctcgcc
cggcgcaagatcccgtcgctctaccgcgtccacgaccgcccgggcgccgagaagatcgac
gacctgcgcgccgcgctcaaggaaaagggcctgaccctcggtggcggcgagaagccgacc
ccggcggacttcaacgccctgatcgaggaggccaagggtcgcccggacttcgccaccgtc
cagaccctgctgctgcgctcgctgcagcaggcggtctacgcgccggacaacctgggtcac
ttcggtctggcccacgagcactacgcccacttcacctcgccgatccgtcgctacccggac
ctgatggtgcaccgcgccatccggcacgtgctgcgcaccggtgccgcggacaacttcccg
tacagccaggaagagatggtcctgatcggcgagcactgctccaacaacgagcgccgtgcc
gacgaggccacgcgcgatgccaccgactggctcaagtgcgagttcatgctcgacaaggtc
ggcaacgtctacgaaggccgcgtggccttcgtgctgggcttcggtctgttcgtcgagctc
aaggacttcttcgtcgagggcctgttgcacatcaccgccctcaagcgggacttctaccac
ttcgatccggtcagcgtctcgctcaagggcgagcgcagcggcaagacctactcgctcaac
gacaccatccgcgtgcgcgtcgcgcgggtcgacctcgacgagcgcaagatcgacttcatg
ctgcccgaggacgaagaaggcacgggcgacgacgagtcgggccgcgacgagggcaagtcc
ccgaagggcgccggtgagtcggatgacggcgcctcgaccgacgagggcaacggtggcggc
aagaagcgccgcccgcgtcggcgtcgtcgcaagcccaagggcgatggcaacgccgagcag
ggcgagggtcaatcgggcggcgagtccggtgacaagcgtccgggcaagggtgacgactcc
gccgctaccccgaccgactga
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