Grimontia hollisae: AL542_10160
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Entry
AL542_10160 CDS
T04260
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gho
Grimontia hollisae
Pathway
gho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL542_10160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gho03019
]
AL542_10160
03400 DNA repair and recombination proteins [BR:
gho03400
]
AL542_10160
Enzymes [BR:
gho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL542_10160
Messenger RNA biogenesis [BR:
gho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL542_10160
DNA repair and recombination proteins [BR:
gho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AL542_10160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AMG30694
LinkDB
All DBs
Position
1:1378260..1380140
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AA seq
626 aa
AA seq
DB search
MSGYPIMRSAMTVAESAEMTPPLTHDETVLQQVFGYHSYRDGQKEIIDATIGGRDALVIM
PTGGGKSLCYQIPALVRDGVTIVISPLISLMKDQVDQLLANGVQAACLNSSMTPESQSDT
WQALRNGNLKLLYVSPERILMRDFIERLQAVTLGLIAVDEAHCISQWGHDFRPEYAQLGS
LKQHFPGVPVMALTATADDTTRQDICQRLALVDPHIYLGSFDRPNIRYTLVEKHKPLAQL
TQFLATQSGQSGIVYCNSRKRVEQVAEKLMGSNIRAAAYHAGMTADQRAWVQEAFQRDDV
QIVVATVAFGMGINKPNVRFVVHYDIPRNIESYYQETGRAGRDGLPAEAILFYDPSDIGW
LHRCLEEKPDGEQKRVESHKLNAMGAFAEALTCRRLVLLNYFGEYRNEPCGNCDICLDPP
TLFDGTEQAQKALSCVYRVNQNFGIGYTVEVLRGMQNQRIKEHGHDKISTYGLGKAFSHE
YWVSIFRQLIHRGYLVQNIARSSVLQLTEEARPVLRGEIALELAVPRLGLSERSKADKLG
KRNYDKKLFAKLRKLRKAIADEEDIPPYVVFNDATLIEMAEMIPTSQAELLAVNGVGQRK
LEKYGNVFLDVIEDHITLNHDESRYG
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagcggctatcccataatgagaagtgctatgaccgttgccgaatcagccgaaatgacg
ccaccactgacgcatgacgaaaccgttttgcagcaggtgttcggctaccacagttaccgt
gacggtcagaaagaaattatcgacgccaccattggcgggcgtgatgcactggtgatcatg
ccaaccggcggtgggaaaagcctctgttaccaaattccggcgctggtgcgtgatggtgtg
accattgtgatctcaccgctgatctccctgatgaaagatcaggtcgatcagctgctggcc
aacggcgtgcaggcagcgtgcctgaattcttccatgacaccggaatcccagtctgacacc
tggcaggcgctgcgaaatggcaaccttaagctgttgtacgtgtcaccggaacgtattctg
atgcgggatttcattgaacgcctgcaagccgtgacactgggcctgatcgcggttgatgaa
gcgcactgtatcagtcagtggggacacgattttcgcccggaatatgcccagcttggcagt
ttgaagcagcacttccccggggtgcctgtcatggcactgaccgccacggcagatgacact
acacgacaggatatctgccagcgtttggcacttgtagatccgcatatctacctcggcagc
tttgatcgcccgaatatccgttacaccctggtggaaaaacacaaaccgctggcgcagttg
acccagtttctcgctacccagtccgggcaaagcggtattgtgtattgcaacagccgcaaa
cgggtcgaacaggtggcggaaaagctgatgggcagcaacatccgcgctgcggcctatcat
gccgggatgactgccgatcagcgcgcctgggtacaggaagcgtttcagcgggatgatgta
cagattgtggtggcaaccgtggcatttggcatgggtattaacaagcccaacgtgcgcttt
gtggtccattacgatattccgcgcaatatcgaatcctattatcaggagaccgggcgggcc
ggacgggatggcttgccggcagaagcgatactgttttatgacccctccgatattggctgg
ctgcaccgttgccttgaggaaaaaccggatggcgaacaaaaacgggtggaaagccacaag
ctcaatgcgatgggcgcatttgcggaggccctgacctgccgccgtctggtgctgctgaac
tatttcggcgaatatcgcaacgagccctgtggcaactgcgatatctgccttgacccgcca
accctgtttgacggcactgagcaggcgcaaaaagcgctgtcctgtgtttatcgcgtgaac
cagaattttggtatcggctataccgttgaagtgctgcgcggaatgcaaaaccagcgtatt
aaggagcacggacacgacaaaatcagtacctatggcttaggaaaagcattcagccacgag
tactgggtcagcattttccgccagcttatccaccgtggttatctggtgcagaacattgcc
cgaagctctgtgctgcaactgaccgaagaagcccgtcctgtgctgcgtggtgagattgca
ctggagcttgccgtgccaaggctggggctgtctgagcgcagtaaagctgacaaacttggc
aagcgtaactacgacaagaaactgttcgccaagctccgcaagctgcgtaaagcgattgct
gatgaagaagacattccgccgtatgtggtcttcaatgatgccaccctgattgaaatggcg
gagatgatcccaacctcgcaggcagagcttctggcggtcaacggtgttggccagcgtaag
cttgagaaatacggcaatgtgtttctggatgtgattgaagatcacatcaccctcaaccat
gacgagtctcgctatggataa
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