Gimesia benthica: F1728_30515
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Entry
F1728_30515 CDS
T06296
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gim
Gimesia benthica
Pathway
gim03410
Base excision repair
gim03430
Mismatch repair
gim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F1728_30515 (recJ)
03430 Mismatch repair
F1728_30515 (recJ)
03440 Homologous recombination
F1728_30515 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gim03400
]
F1728_30515 (recJ)
DNA repair and recombination proteins [BR:
gim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
F1728_30515 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
F1728_30515 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F1728_30515 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QGQ26743
UniProt:
A0A6I6AIX8
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All DBs
Position
7885094..7886857
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AA seq
587 aa
AA seq
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MTQNWRFAPHDESQVRRLSSEMRISPLLAQVLIARGLQDVGTARSFINARMNELLDPCSM
PGIEEATDRVIAALNSKRRITIYGDYDVDGMTATSILLQCITLANGQCDYFIPNRLDDGY
GLNCDAIRELHEEDPERLLITVDCGITSVTEAALAKELGLELIITDHHQMDEELPAAACL
VHPRLPGGDYEFPHLCGAGVALKLAWAVCQKLGDGQKASPQMREFLKCAVGLAAIGTIAD
VVPLVGENRIIVRYGLGALAELAPLGLQELMKVAEIKTGQPLDTEDIGFAIAPRLNAAGR
LGQARLAVELLTTSNRERAVQLALYLDELNKNRRTVERRILKQAREMVEENAEWEEHQTL
VLAHPDWHPGVIGIVANRVAEHFEKPTVLIALEAATRTGQGSARSFAGFDLHAGFSSCAE
HLMRFGGHQAAAGLRIEEDKIEDFRQAFAAYAATAPPPSDDDLLVKIDAEVCLNEITKQA
VLELDCLGPFGQENPRPQFVATRVELAEPPKTMGEGGRHLSLVFQQHKTRIRAIAFGKGE
WASQMEEAGGPFSISFAPNINRFRGFESVQLQLKDWISETADTPVTS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaaactggcgatttgccccccacgatgaatctcaggtacgccgcctcagttct
gaaatgcggatttctcccctgttggctcaggttttgatcgcccgcgggctccaggatgtg
ggcaccgcccgcagttttatcaacgctcgcatgaatgagcttctcgatccctgcagtatg
cctggcatcgaagaagctaccgaccgtgtgatcgctgccctgaattctaaacgtcggatc
actatctacggcgactacgacgtcgatggcatgaccgccaccagtattctgctgcagtgc
attaccctggcgaatggacaatgcgactatttcattcccaaccgcctggatgatggctac
ggactgaactgtgatgccatccgcgaattacatgaagaagatcccgagcggctgttgatt
acggtcgactgtgggatcaccagtgtcacagaggccgctctcgcaaaagaactcggcctg
gaactgattattaccgatcaccatcagatggatgaagagctgccggctgcggcctgcctc
gtgcatccccgtctccccggaggcgactatgaatttcctcacctctgtggtgccggtgtc
gctttgaaactggcctgggccgtttgccagaaactgggggatggccagaaagcctctccc
cagatgcgcgagtttctcaaatgtgccgtcggattggctgcaattgggactattgccgat
gtggttcccctggttggtgaaaatcggattattgtccgctacggactcggggcactcgca
gaactggctcccctgggactgcaggagctgatgaaagtcgcagagatcaaaaccggtcag
ccgctcgataccgaagacatcggctttgccatcgcgccccgactgaatgccgccggtcga
ctggggcaggcccgcctggcagtagaactgctcaccaccagtaatcgggaacgggccgtg
caactggcactctacctggatgaactcaataaaaaccgtcgcacggtcgaacgccggatt
ctcaagcaggcacgcgagatggtcgaagagaacgccgagtgggaagagcaccagaccctg
gtacttgcccatccggactggcaccccggcgtgatcggcatcgttgcaaaccgagtcgcc
gaacattttgaaaaaccaacggttttgatcgcccttgaagccgcgacccgcaccggtcag
ggatcggcgcgatccttcgccggctttgatctgcatgccggtttctcatcctgtgcagag
cacctgatgcgtttcggcggtcaccaggctgccgcgggcttgcgcatcgaagaagacaaa
atcgaagactttcgtcaggcgttcgccgcctatgcggctacggcgccaccaccgtcagac
gacgatctactggtgaagatcgatgcggaagtctgtctgaacgaaatcaccaaacaggcg
gtgttggaactggattgcctgggcccgttcgggcaggagaatccacggcctcagtttgtc
gccacccgggtcgaactggccgagcctcccaaaacgatgggagaggggggacgtcacctg
tcgctggtcttccagcagcacaaaacccgtattcgtgccatcgccttcggcaaaggagag
tgggccagccagatggaagaagccggcggtcctttttcgatcagcttcgctccgaatatc
aaccgctttcgtggctttgaaagcgtacagctccaactgaaagactggatctccgagaca
gctgatacgcccgttacttcctaa
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