Geobacillus kaustophilus: GK1053
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Entry
GK1053 CDS
T00217
Name
(GenBank) hypothetical conserved protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gka
Geobacillus kaustophilus
Pathway
gka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GK1053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gka03019
]
GK1053
Messenger RNA biogenesis [BR:
gka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GK1053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
BAD75338
UniProt:
Q5L142
LinkDB
All DBs
Position
complement(1078861..1080528)
Genome browser
AA seq
555 aa
AA seq
DB search
MKLLTDQQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYL
VKHADKVKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLI
EIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVEGRIIFATFASNIHRLQQ
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPANRVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
VLGISDKEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
AAGPDIISRGFVYMRESGDLISEAQVLISKHLEKVLERKTNQWSEIKNEITETLAPFLYE
RTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgttgacagatcagcaagttggcgtttttgccctcggcggactgggtgaaatt
ggaaaaaatacatacggcgtacaattccaagacgaaatcattgtcattgacgcaggcatt
aagtttccggaagatgagctgctcgggatcgactatgtcattccagactactcctattta
gtgaagcacgcggacaaagtgaaaggactgttcatcacccacgggcacgaagaccatatc
ggcggcattccgtatttgctccggcaggtgaacatcccgatttacggcggcaaattagcg
cttgggctgattcgcaataagcttgaggaacatggattgttgcgccaagcgaaactcatt
gagattcgcgaagacgatgtcatccgctttcaaaaaacggccgtcacctttttccggacg
acacacagcattccggacagctacggtattgttgtgaaaacgccagtcgggcaaatcgtt
cacactggggattttaaattcgactttacgccggtcggcgagccggccaatttgacaaaa
atggccgaaattgggaaagaaggagttctttgcctgctgtcggacagcacgaacagcgag
atcccgcattttacgatgtcggagcggcgcgtcggtgaaagcattcacgacattttccgc
aaggtggaaggacgcatcattttcgccacatttgcatcaaacatccaccgtctccaacag
gtgacggaagcagccgtcgccaacaaccgaaaaatcgctgtcttcggtcgaagcatggaa
gcggcgattgagatcggacaagacctcggctatatcaaatgtccgaaaggcacgttcgtc
gacgcgaacgaaatcaaccgcctgccggccaaccgggtgacgattttatgcaccggtagc
caaggggagccgatggccgccttgtcgcgcatcgccaacggcacgcaccggcaaattcaa
atcatcccgggcgacacggtcgtcttttcctcatcgccgattccgggcaacacggtgagc
gtcaaccggacaatcaacatgctgtaccgcgccggcgcagaagtcatccatggcccgctc
aacgacatccatacgtccggccacggtgggcaggaagaacaaaaattgatgatccggctg
atgaagccgaaatatttcatgccgatccacggcgaataccgcatgcaaaaaatgcacgcc
aagctcgccatcgactgcggcgtgccggaggaaaactgctttattatggacaacggcgaa
gtgcttggcatcagcgacaaagaagcgcgcatcgtcggcaagatcccgtccggctccgtc
tacatcgacggcagcggtgtcggcgacatcggcaacatcgtcttgcgcgaccgccgcatt
ttgtctgaggaagggctcgtgattgtcgtcgtcagcatcaacatgaaagagttcaaaatc
gccgccggcccggacattatttctcgcggcttcgtctatatgcgtgagtcaggtgactta
atcagcgaagcgcaagtgttgatctccaagcatctcgaaaaagtgctggaacggaaaacg
aaccaatggtcggagatcaaaaacgaaattacggaaacgctcgctccgttcttgtacgag
cggacgaaacggcggccaatgattttgccgatcatcatggaaatctaa
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integrated database retrieval system