Glaciimonas sp. PAMC28666: JQN73_09885
Help
Entry
JQN73_09885 CDS
T07066
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
glc
Glaciimonas sp. PAMC28666
Pathway
glc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
glc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JQN73_09885 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
glc03021
]
JQN73_09885 (rpoC)
03400 DNA repair and recombination proteins [BR:
glc03400
]
JQN73_09885 (rpoC)
Enzymes [BR:
glc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JQN73_09885 (rpoC)
Transcription machinery [BR:
glc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JQN73_09885 (rpoC)
DNA repair and recombination proteins [BR:
glc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JQN73_09885 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QRX84449
LinkDB
All DBs
Position
2325604..2329845
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVITDPGMTPLKRCQIMSEDDFAAKYEEYGDDFTAFM
GAEGIRELLRAIDIDREAETLRQDLKDSKSEAKIKKYSKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLEVMGIASTIKAAKKEVENQTSVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREQINGKNEGMMFPDVSEAIRAYDNK
EVELTTRVTVRITEYPKDLVTGEFVKTIKRYETTVGRAILSEILPKGLPFTVLNRALKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKVTLIATAEQ
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMEQLKVEDVVRRDGTKGTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGAVMKAMVEGGEVIEALRDRI
LGRVAANDIVNPETQATLYESGTLLDEDSVEEIERLGIDEVKVRTPLTCDTRYGLCAQCY
GRDLGRGSLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGIVR
FTATMRYVTNGKNELIVISRSGEVLITDDHGRERERHKVPYGATMIVNDGMTIKAGATLA
TWDPLTRPIITEYTGTVKFENVEEGSTVARQIDEVTGLSTLVVIDAKRRGSVTKTVRPQV
KLLNEQEQEVKISGTEHAVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVDAGDANYITGEQVERSELLDENDRVTAAGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDTWEAEE
RTALLQSEQQARNLQAEAEVHAAETQGTTDGEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatttattcaagcaagttcagcaaaatgaacagttcgacgcgatc
aaaattggtcttgcgtcaccagataaaatccgttcatggtcttatggtgaagtaaaaaag
ccagaaaccatcaactatcgtaccttcaagcctgagcgcgacggtctgttttgcgccaag
atttttggcccgatcaaagactacgaatgcctgtgcggcaagtacaagcgtctgaagcat
cgcggtgttatctgcgaaaagtgtggcgttgaagtcacgctggcaaaagtgcgtcgtgag
cgcatgggccacattgaactggcatcgccaaccgcacatatctggttcctgaaatcgctg
ccgtcacgtctgggtatggtcctcgacatgacattgcgggacatcgaacgcgtgttgtat
tttgaagcgtacgttatcactgatccaggcatgacgccgttaaagcgttgccagatcatg
tcggaagacgacttcgcagccaaatacgaagaatacggcgacgatttcaccgcattcatg
ggtgccgaaggtatccgtgaactgctgcgtgcaattgatatcgaccgcgaagccgagact
ttgcgccaggacttgaaagattccaagtcggaagccaaaatcaagaaatactccaaacgt
ctaaaagtgctggaagcgttccagcgttcgggtatcaagccggactggatgatcatggaa
gtgttgccagtgttgccgccggaattgcgtccgctggtaccgctggatggtggtcgtttc
gccacatcggatctgaacgacctgtatcgtcgcgtcattaaccgtaataatcgtctgaag
cgcctgatggaattgcgcgcgccggaaatcattacgcgtaatgaaaagcggatgttgcag
gaagcggtcgattcgttgctggataacggtcgtcgcggtaaggcaatgactggcgccaac
aagcgtccattgaagtcattggctgaaatgattaagggtaagggcggtcgtttccgtcaa
aacttgttgggtaagcgcgtcgattactctggtcgttcggtgattgtggttggtccacaa
ctgaaattgcatcagtgcggcttgccgaaattgatggccttggaattattcaagccgttc
attttcaacaagcttgaagtaatgggtatcgccagcaccatcaaagcagcaaaaaaggaa
gttgaaaatcaaacttctgtggtgtgggacattctggaagaagtgatccgtgaacatccg
gtcatgttgaaccgtgcaccgacattgcatcgtttaggtatccaggcgtttgagccggtc
ctgatcgaaggtaaagcgattcagttgcatccgctggtctgcgccgcatttaacgccgac
tttgacggtgaccaaatggcggtccacgttccactgtcgatcgaagcgcagatggaagcg
cgtacgctgatgctggcgtcgaacaacattttgttcccatcgaacggcgagccatcgatc
gttccttcgcaagatatcgtgttgggtctgtactacgctactcgcgaacagatcaacggt
aagaacgaaggcatgatgttcccggacgtttcagaagcgatccgtgcgtatgacaacaag
gaagtcgaactgacaacccgtgtcaccgtgcgtattactgaatatccgaaggatctggta
accggtgagttcgtcaagaccatcaagcggtacgaaaccaccgttggccgtgcgatcctg
tcagagattctgcctaagggtctgccattcaccgtactgaaccgtgcgttgaagaagaaa
gaaatttcaaagctgatcaacacttcgttccgtaagtgtggtttgcgtgcgaccgttgtt
ttcgccgatcaattgatgcagtcaggtttccgtttggcgacccgtgccggtatctcgatc
tgcgttgacgatatgttggtaccgccgcaaaaagtcacactgatcgccaccgcagagcaa
gaagttaaacagatcgaacagcaatattcgtccggtttggtgactgctggcgaacgttat
aacaaagtggttgatatctggggcaaggccggtgatgacgtcggcaaggccatgatggaa
cagctgaaggttgaagacgtggttcgccgcgacggcaccaaaggcacacaagaatcgttc
aacgccatttacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcag
ttggccggtatgcgtggtctgatggcgaaaccggatggttcgattattgaaacgccgatc
accgcgaacttccgcgaaggtctgaacgttttgcagtactttatttccacccacggtgcg
cgtaaaggtctggccgatacggcattgaagacagcgaattcaggttacctgacacgtcgt
ctggttgacgttacccaagatctggttgtgatcgaagatgattgcggcacatcgaacggt
gcggtcatgaaggcaatggttgaaggtggtgaagtcatcgaagcgttgcgcgaccgtatt
cttggtcgtgttgctgcaaacgacatcgtcaatcctgaaacgcaagcaacattgtacgaa
tccggcacattgctggacgaagattccgtcgaagagatcgaacgtctcggtatcgacgaa
gtcaaggtccgtacaccgctgacatgtgacacacgctatggcctgtgcgcacaatgttac
ggtcgtgatctgggtcgcggttcgttggtcaatgccggcgaagcagtcggtgtgatcgcg
gcgcagtcgattggtgagccgggtacacagctgaccatgcgtacgttccacattggtggt
gcagcatcccgtgccgcagtggcgtcaagcgttgaagccaagtcgaacggtattgtgcgc
tttacagcaaccatgcgttacgtcaccaacggtaagaacgagttgatcgttatttcccgt
tcgggcgaagtgctgattactgatgaccatggtcgtgagcgtgagcgtcataaagtgcct
tacggcgcaaccatgatcgtcaacgacggcatgacaatcaaggccggcgcaacattggca
acatgggatccgctgacacgtccgatcattaccgagtacaccggtactgtgaagtttgaa
aacgttgaagaaggttcgaccgttgcacgtcagatcgatgaagtaaccggtctgtcaaca
ttggttgttatcgatgctaaacgtcgcggctctgtgacaaaaaccgttcgtccgcaagtt
aaattgttgaacgaacaagaacaagaagtgaagatctccggcaccgaacacgctgtgacg
attggtttccaggttggcgcgttgattaccgtgaaagacggtcagcaagtacacgttggt
gaagtactggcacgtattccgactgaatcgcaaaaaacacgtgacattaccggtggtttg
ccgcgtgttgctgagttgtttgaagcgcgttcaccgaaagacgccggtatgttggctgag
gtaaccggtaccgttgcattcggtaaggaaaccaaaggtaagcaacgtctggaaatcaca
gacatggatggcaacaagcatgagttcctgattaccaaggacaaacaagtgctggtccat
gacggtcaagtggtgaacaagggtgaaatgattgttgacggtccagccgatccacaagac
attctgcgcctgttgggtatcgaagcgttggcacgttacatcgttgacgaagtacaggac
gtgtatcgtctgcagggtgtgaagatcaatgacaagcacattgaagtgatcgtccgtcag
atgctgcgtcgggttcagatcgttgatgctggtgatgcaaattacatcactggtgaacaa
gttgagcgttcagagttgctcgatgaaaacgaccgcgttacagctgcaggcaagattcca
gcgacttacgaaaacgtattgctgggtattaccaaggcatcgttgtcgactgactcgttc
atttctgctgcatcgttccaggagacaacacgtgtcctgaccgaagcggcgatcatgggc
aaacgcgatggtctgcgtggtctgaaagaaaacgtcatcgttggtcgtctgatcccggct
ggtacgggtctggctttccaccgtgcacgcaaggaaaaagacacgtgggaagcggaagag
cgcactgcgttgctgcaatctgagcaacaggcgcgtaaccttcaagccgaagcagaagta
cacgcagcagaaacacagggaacgactgacggcgaagcttaa
DBGET
integrated database retrieval system