KEGG   Glaciimonas sp. PAMC28666: JQN73_09885
Entry
JQN73_09885       CDS       T07066                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
glc  Glaciimonas sp. PAMC28666
Pathway
glc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:glc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    JQN73_09885 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:glc03021]
    JQN73_09885 (rpoC)
   03400 DNA repair and recombination proteins [BR:glc03400]
    JQN73_09885 (rpoC)
Enzymes [BR:glc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     JQN73_09885 (rpoC)
Transcription machinery [BR:glc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     JQN73_09885 (rpoC)
DNA repair and recombination proteins [BR:glc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      JQN73_09885 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: QRX84449
LinkDB
Position
2325604..2329845
AA seq 1413 aa
MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVITDPGMTPLKRCQIMSEDDFAAKYEEYGDDFTAFM
GAEGIRELLRAIDIDREAETLRQDLKDSKSEAKIKKYSKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLEVMGIASTIKAAKKEVENQTSVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREQINGKNEGMMFPDVSEAIRAYDNK
EVELTTRVTVRITEYPKDLVTGEFVKTIKRYETTVGRAILSEILPKGLPFTVLNRALKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKVTLIATAEQ
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMEQLKVEDVVRRDGTKGTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGAVMKAMVEGGEVIEALRDRI
LGRVAANDIVNPETQATLYESGTLLDEDSVEEIERLGIDEVKVRTPLTCDTRYGLCAQCY
GRDLGRGSLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGIVR
FTATMRYVTNGKNELIVISRSGEVLITDDHGRERERHKVPYGATMIVNDGMTIKAGATLA
TWDPLTRPIITEYTGTVKFENVEEGSTVARQIDEVTGLSTLVVIDAKRRGSVTKTVRPQV
KLLNEQEQEVKISGTEHAVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVDAGDANYITGEQVERSELLDENDRVTAAGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDTWEAEE
RTALLQSEQQARNLQAEAEVHAAETQGTTDGEA
NT seq 4242 nt   +upstreamnt  +downstreamnt
atgaaagcactgctcgatttattcaagcaagttcagcaaaatgaacagttcgacgcgatc
aaaattggtcttgcgtcaccagataaaatccgttcatggtcttatggtgaagtaaaaaag
ccagaaaccatcaactatcgtaccttcaagcctgagcgcgacggtctgttttgcgccaag
atttttggcccgatcaaagactacgaatgcctgtgcggcaagtacaagcgtctgaagcat
cgcggtgttatctgcgaaaagtgtggcgttgaagtcacgctggcaaaagtgcgtcgtgag
cgcatgggccacattgaactggcatcgccaaccgcacatatctggttcctgaaatcgctg
ccgtcacgtctgggtatggtcctcgacatgacattgcgggacatcgaacgcgtgttgtat
tttgaagcgtacgttatcactgatccaggcatgacgccgttaaagcgttgccagatcatg
tcggaagacgacttcgcagccaaatacgaagaatacggcgacgatttcaccgcattcatg
ggtgccgaaggtatccgtgaactgctgcgtgcaattgatatcgaccgcgaagccgagact
ttgcgccaggacttgaaagattccaagtcggaagccaaaatcaagaaatactccaaacgt
ctaaaagtgctggaagcgttccagcgttcgggtatcaagccggactggatgatcatggaa
gtgttgccagtgttgccgccggaattgcgtccgctggtaccgctggatggtggtcgtttc
gccacatcggatctgaacgacctgtatcgtcgcgtcattaaccgtaataatcgtctgaag
cgcctgatggaattgcgcgcgccggaaatcattacgcgtaatgaaaagcggatgttgcag
gaagcggtcgattcgttgctggataacggtcgtcgcggtaaggcaatgactggcgccaac
aagcgtccattgaagtcattggctgaaatgattaagggtaagggcggtcgtttccgtcaa
aacttgttgggtaagcgcgtcgattactctggtcgttcggtgattgtggttggtccacaa
ctgaaattgcatcagtgcggcttgccgaaattgatggccttggaattattcaagccgttc
attttcaacaagcttgaagtaatgggtatcgccagcaccatcaaagcagcaaaaaaggaa
gttgaaaatcaaacttctgtggtgtgggacattctggaagaagtgatccgtgaacatccg
gtcatgttgaaccgtgcaccgacattgcatcgtttaggtatccaggcgtttgagccggtc
ctgatcgaaggtaaagcgattcagttgcatccgctggtctgcgccgcatttaacgccgac
tttgacggtgaccaaatggcggtccacgttccactgtcgatcgaagcgcagatggaagcg
cgtacgctgatgctggcgtcgaacaacattttgttcccatcgaacggcgagccatcgatc
gttccttcgcaagatatcgtgttgggtctgtactacgctactcgcgaacagatcaacggt
aagaacgaaggcatgatgttcccggacgtttcagaagcgatccgtgcgtatgacaacaag
gaagtcgaactgacaacccgtgtcaccgtgcgtattactgaatatccgaaggatctggta
accggtgagttcgtcaagaccatcaagcggtacgaaaccaccgttggccgtgcgatcctg
tcagagattctgcctaagggtctgccattcaccgtactgaaccgtgcgttgaagaagaaa
gaaatttcaaagctgatcaacacttcgttccgtaagtgtggtttgcgtgcgaccgttgtt
ttcgccgatcaattgatgcagtcaggtttccgtttggcgacccgtgccggtatctcgatc
tgcgttgacgatatgttggtaccgccgcaaaaagtcacactgatcgccaccgcagagcaa
gaagttaaacagatcgaacagcaatattcgtccggtttggtgactgctggcgaacgttat
aacaaagtggttgatatctggggcaaggccggtgatgacgtcggcaaggccatgatggaa
cagctgaaggttgaagacgtggttcgccgcgacggcaccaaaggcacacaagaatcgttc
aacgccatttacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcag
ttggccggtatgcgtggtctgatggcgaaaccggatggttcgattattgaaacgccgatc
accgcgaacttccgcgaaggtctgaacgttttgcagtactttatttccacccacggtgcg
cgtaaaggtctggccgatacggcattgaagacagcgaattcaggttacctgacacgtcgt
ctggttgacgttacccaagatctggttgtgatcgaagatgattgcggcacatcgaacggt
gcggtcatgaaggcaatggttgaaggtggtgaagtcatcgaagcgttgcgcgaccgtatt
cttggtcgtgttgctgcaaacgacatcgtcaatcctgaaacgcaagcaacattgtacgaa
tccggcacattgctggacgaagattccgtcgaagagatcgaacgtctcggtatcgacgaa
gtcaaggtccgtacaccgctgacatgtgacacacgctatggcctgtgcgcacaatgttac
ggtcgtgatctgggtcgcggttcgttggtcaatgccggcgaagcagtcggtgtgatcgcg
gcgcagtcgattggtgagccgggtacacagctgaccatgcgtacgttccacattggtggt
gcagcatcccgtgccgcagtggcgtcaagcgttgaagccaagtcgaacggtattgtgcgc
tttacagcaaccatgcgttacgtcaccaacggtaagaacgagttgatcgttatttcccgt
tcgggcgaagtgctgattactgatgaccatggtcgtgagcgtgagcgtcataaagtgcct
tacggcgcaaccatgatcgtcaacgacggcatgacaatcaaggccggcgcaacattggca
acatgggatccgctgacacgtccgatcattaccgagtacaccggtactgtgaagtttgaa
aacgttgaagaaggttcgaccgttgcacgtcagatcgatgaagtaaccggtctgtcaaca
ttggttgttatcgatgctaaacgtcgcggctctgtgacaaaaaccgttcgtccgcaagtt
aaattgttgaacgaacaagaacaagaagtgaagatctccggcaccgaacacgctgtgacg
attggtttccaggttggcgcgttgattaccgtgaaagacggtcagcaagtacacgttggt
gaagtactggcacgtattccgactgaatcgcaaaaaacacgtgacattaccggtggtttg
ccgcgtgttgctgagttgtttgaagcgcgttcaccgaaagacgccggtatgttggctgag
gtaaccggtaccgttgcattcggtaaggaaaccaaaggtaagcaacgtctggaaatcaca
gacatggatggcaacaagcatgagttcctgattaccaaggacaaacaagtgctggtccat
gacggtcaagtggtgaacaagggtgaaatgattgttgacggtccagccgatccacaagac
attctgcgcctgttgggtatcgaagcgttggcacgttacatcgttgacgaagtacaggac
gtgtatcgtctgcagggtgtgaagatcaatgacaagcacattgaagtgatcgtccgtcag
atgctgcgtcgggttcagatcgttgatgctggtgatgcaaattacatcactggtgaacaa
gttgagcgttcagagttgctcgatgaaaacgaccgcgttacagctgcaggcaagattcca
gcgacttacgaaaacgtattgctgggtattaccaaggcatcgttgtcgactgactcgttc
atttctgctgcatcgttccaggagacaacacgtgtcctgaccgaagcggcgatcatgggc
aaacgcgatggtctgcgtggtctgaaagaaaacgtcatcgttggtcgtctgatcccggct
ggtacgggtctggctttccaccgtgcacgcaaggaaaaagacacgtgggaagcggaagag
cgcactgcgttgctgcaatctgagcaacaggcgcgtaaccttcaagccgaagcagaagta
cacgcagcagaaacacagggaacgactgacggcgaagcttaa

DBGET integrated database retrieval system