Glaesserella sp. 15-184: CJD39_05075
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Entry
CJD39_05075 CDS
T05643
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
gle
Glaesserella sp. 15-184
Pathway
gle03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CJD39_05075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gle03400
]
CJD39_05075
Enzymes [BR:
gle01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
CJD39_05075
DNA repair and recombination proteins [BR:
gle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
CJD39_05075
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CJD39_05075
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CJD39_05075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
CHASE3
Motif
Other DBs
NCBI-ProteinID:
AUI65985
LinkDB
All DBs
Position
complement(1108476..1110026)
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AA seq
516 aa
AA seq
DB search
MNQPTFFIYDYESFGVDPASDRPAQFAGIRTDSEFNIIGEPVMFYCKQTADYLPSPEAVM
VTGITPQLCNQQGLSEPEFAERIHAEFSQPNTCTMGYNNIRYDDEMTRYTFFRNFFDPYE
YSWKNGNSRWDLLDVVRACYALRPDGIEWAYDDDGMPSFKLENLTKANGIAHDNAHDAMS
DVYATIAMAKLIKAKQPKLFDFFLQNRGKKALEQMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLVWHPTNKNAVIVCDLSGDMSALLNEPAELLRERLYTKKTELEAQGLASVPLKLVHI
NKCPILAPAKTLLPENAARLGIDRLACLENLKQLKSQKSLVREKVIEIFAEEKAYPASNN
VETTLYNGFFEPADKNNMAILRNLKPEELAHHGLKFADPRVEPLLFHYRARHYPETLSRA
EQVRWQKYCYQQLEAKAEAFEQAINELSAQYHDNPEKVKLLEDLTAYATQLMQPQPVKAT
SSSGSEALLSELNQLADQGLTKKDKLKAISALLNQK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaccaaccttttttatttacgattacgaaagttttggggtcgatcctgcgtcc
gatcgtcctgcacaatttgcggggatccgcacggatagtgaatttaacattatcggtgaa
cccgtgatgttttattgcaagcagaccgcagattacctgccatcacccgaagcggtaatg
gttacgggaattacgccgcagctgtgtaatcaacaagggttgtccgagcctgaatttgct
gagcgtattcacgctgaatttagccagccgaacacctgcacaatgggctataacaacatt
cgttacgatgatgaaatgactcgttatacctttttccgtaacttttttgatccttatgaa
tatagctggaaaaacggcaattcccgttgggatctgcttgatgtggtgcgtgcttgctat
gcgttgcgtcctgacgggattgagtgggcgtatgacgatgacggtatgccgagttttaag
ttggaaaatctcaccaaagcgaatggcattgctcacgataacgcacacgatgcgatgtcg
gatgtgtatgccaccattgcaatggcaaaattgattaaagcgaagcagccgaaattgttc
gattttttcttgcaaaatcggggcaaaaaagcgttagagcagatgattgatgtgggcgaa
atgacaccgcttgtacacgtttcgggaatgttgggcaattatcgtggcaacaccgcttgg
gtcgtgccattggtgtggcacccgaccaataaaaatgcggtgattgtgtgtgatttgtcg
ggtgatatgtcggcgttgctcaatgaacctgccgagctgttgcgtgagcgtctttacacc
aaaaaaaccgagcttgaagcacaggggcttgcgtctgtgccgttgaagttggtgcatatc
aataaatgcccgattttagccccagccaaaaccttattgcctgaaaatgcagctcgtttg
gggatcgaccgcctagcctgtttagagaatttgaaacagctcaaatcacaaaaaagcctt
gtgcgagaaaaggtgattgaaatttttgcggaagaaaaagcctatccagcgtccaacaat
gtcgaaacaacgttatacaacggcttttttgagccagctgacaaaaataatatggcgatt
ttgcgaaaccttaagccagaagagttagcacatcacggcttaaaatttgccgatccccgt
gttgaaccgttgctgttccactatcgagcaagacattaccctgaaaccctaagccgtgcg
gaacaagtacgttggcagaagtattgctatcaacagcttgaagccaaagccgaagccttt
gaacaggcgattaacgagctgtccgctcaatatcacgataaccccgaaaaagtaaaatta
ttggaagatctgaccgcttacgctacgcaattaatgcaaccccagcctgtaaaagcgaca
agtagcagtggatcggaagccttgctttccgagctaaatcagcttgccgatcaaggatta
acaaaaaaagataaattaaaagcaataagtgcattattgaaccaaaaataa
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