KEGG   Glarea lozoyensis: GLAREA_09944Help
Entry
GLAREA_09944      CDS       T04883                                 

Definition
(RefSeq) ATP-dependent DNA ligase DNA-binding protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
glz  Glarea lozoyensis
Pathway
glz03030  DNA replication
glz03410  Base excision repair
glz03420  Nucleotide excision repair
glz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:glz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GLAREA_09944
   03410 Base excision repair
    GLAREA_09944
   03420 Nucleotide excision repair
    GLAREA_09944
   03430 Mismatch repair
    GLAREA_09944
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:glz03032]
    GLAREA_09944
   03400 DNA repair and recombination proteins [BR:glz03400]
    GLAREA_09944
Enzymes [BR:glz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GLAREA_09944
    6.5.1.6  DNA ligase (ATP or NAD+)
     GLAREA_09944
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     GLAREA_09944
DNA replication proteins [BR:glz03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    GLAREA_09944
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     GLAREA_09944
DNA repair and recombination proteins [BR:glz03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     GLAREA_09944
   NER (nucleotide excision repair)
    Other NER factors
     GLAREA_09944
   MMR (mismatch exicision repair)
    Other MMR factors
     GLAREA_09944
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 19468991
NCBI-ProteinID: XP_008084731
UniProt: S3DQU4
LinkDB All DBs
Position
Unknown
AA seq 910 aa AA seqDB search
MPPKQATLGKFFKSPSGTAPKEVPKQSKLAFSTKSNTNGAAPSLKPTPKEDVEMKEDSDS
DVKSKISKDISAETKENVKSRRETKKRSRSPMVKDDEASESRGTKVEVVDPDEDDEPVLK
RPRRSVKVEEDEEDEEPVVSKSARKSTAKSKASDTKKMPPPSNKPKKQPEKAVKVEEEEV
MEIVASKSNSKVREASASESASEAEETNEQEEEDSEDEKPEIAAKAREKVQTTLMSKAKD
PYPDWKPGEPVPYAALCTTFSFIEMTTKRLIIQAHCSLFLRQVLRLTPGDMLPTVLLMIN
KLAADYAGVELGIGESLIMKAIGETTGRSLPVIKQDQKEIGDLGLVAVKSRANQPTMFKP
KALTVQAVHRGLLGIATVSGNGAQARKVDGIKKLLAAADGHAAGKVDITKDKGGPSEAKF
IVRFLEGKLRLGLAEKTVLVSLGQAMVCHEIEKKGSGKVPSTEQLAKGESILKQVFSNLP
SYDVIIPAMLDHGIFNLAEHCKLQPGIPLKPMLAKPTKAITEVLDRFENQTFTCEYKYDG
ERAQIHYVAKDSPVQYKGATSGASKTSEGIAAIFSRNSEDLSKKYPDILAKLNTWVKPDT
KSFVLDCETVGWDTVEKKVLPFQQLMTRKKKDVKIEDVKVKVTVFAFDLLFLNGEAVVEK
SLRERRELLHGAFIPVEGEFGFATSMNGREIDEIQLFLDESVKASCEGLMVKMLDGSESG
YEPSKRSRNWLKIKKDYLSGIGDSLDLVVLGAYYGKGKRTSVYGAFLLACHNPDTDSYET
VCNIGTGFSEAVLEELHSQLKEIVIDRPKPFYSHSSGNQHQPDVWFEPKYVWEVKTADLT
LSPRYKAGCKQGVDPSGEKGISLRFPRFIKVRDDKKPDMATSSRQVAEMYRKQESVTKNK
GPAVDDDFEY
NT seq 2733 nt NT seq  +upstreamnt  +downstreamnt
atgccaccaaaacaggctacattgggcaagttcttcaaaagccccagtggaactgcgccc
aaggaagtccccaagcaatcgaagcttgcattttctaccaagtcgaataccaatggcgcc
gctccaagtctaaagcccacccctaaggaagatgttgagatgaaagaggattccgactca
gatgttaagtcaaagatcagcaaagacatatcagcggaaaccaaggagaatgttaaatct
cggagagaaacaaagaagcgatcgagatccccgatggtaaaagacgacgaggcatccgaa
tcgcgaggtaccaaagtggaagtggttgacccggacgaagatgacgagcctgtattgaaa
cgaccacgcaggtctgtcaaggttgaggaggatgaagaagatgaagagccagtggtgagc
aagtccgctaggaagtctacggctaaatcaaaggcaagtgacaccaagaaaatgcctcct
ccttcaaacaaacccaagaagcaacccgagaaagccgtgaaagtagaggaagaggaggtc
atggaaattgttgcatcgaaaagcaactccaaagtacgcgaggcgagcgcatcagagtct
gcatcagaggctgaagagaccaatgagcaagaggaggaagattctgaagacgagaagccc
gagatcgctgccaaagcccgtgaaaaggtgcagacaacactaatgtcaaaagccaaagac
ccatatccagactggaaacccggagagcctgtgccatacgcagctttgtgtaccacgttt
tctttcattgagatgactacaaaacgacttattatccaagcccactgctcattgtttctc
cgccaagtacttcgtctcactcctggagacatgcttccgacagtacttctcatgatcaat
aaacttgcggcggactacgcaggcgtagagttggggattggagaatccttgattatgaag
gcaattggagaaaccacgggtcgtagtcttcctgtcattaaacaagatcaaaaggaaatc
ggtgatcttggtcttgtggcagtcaagagcagggcaaatcaaccaacaatgttcaagcct
aaagcattgacagttcaggcagtccatcgtggtctacttggaattgccacagtcagtgga
aatggtgctcaagctcggaaagttgatggaataaaaaagctacttgcggcagccgatgga
catgcggcaggaaaagttgatatcacaaaggacaaagggggcccaagtgaagctaaattc
atagtccgatttcttgagggcaaacttcgacttggacttgctgaaaagacggtgctggta
tctttgggtcaagccatggtatgccatgagattgaaaagaagggttcaggaaaagttcca
agtacggaacagcttgccaagggagaatctattctgaaacaggttttcagtaatctacca
agctacgatgtcatcatcccagctatgttggatcatggtatctttaatcttgcagaacac
tgtaaactgcaacctggaattcctttgaaacctatgttggcaaaacctactaaagctatt
actgaggtactggaccggtttgaaaatcagacgttcacttgcgagtataaatatgacggg
gagcgagcccagatacactacgtcgccaaagactccccagtgcaatacaagggcgccaca
tccggtgcgtcaaaaacttcggaagggatagccgcaatcttctctcgaaattccgaagat
ctttccaaaaagtacccagacatcttagccaagttgaacacctgggtcaaaccagacacc
aaaagtttcgtgctcgattgcgagactgtgggctgggatacggttgaaaagaaagtcctg
ccatttcagcagctgatgacccgcaagaagaaggatgttaaaattgaggatgtcaaagtc
aaggtgactgtgtttgcatttgacctgctcttcttgaacggagaggctgtagtcgaaaag
tcgctcagagaacgacgagaacttcttcacggggcattcatccctgtcgaaggagaattc
ggatttgcaacaagtatgaacgggcgggagatcgatgagatacagctatttcttgatgag
agtgtcaaagcttcatgcgaaggtctcatggtcaagatgttggacggtagtgaaagtggt
tacgagccaagtaaacgaagtcggaattggctcaagattaaaaaagattacctttctggc
attggtgactcgctggatcttgtcgtgctcggagcttactatggcaaaggaaaacgcaca
tcagtttacggtgcctttcttcttgcctgccacaaccctgacaccgacagctacgagacc
gtctgcaacatcggcactggattttcagaagcagtgctcgaagaactccacagtcaattg
aaggaaatagtcatcgatcgtccaaagcccttctactctcacagctcaggaaaccaacat
caaccggatgtctggttcgagcctaagtatgtgtgggaagtcaagactgcggatcttaca
ctgagtcctcgatacaaggcgggttgcaaacaaggtgttgatccatctggagagaaggga
atcagtttgcgatttccccggtttatcaaagtgcgtgatgataagaaaccggatatggca
acgagcagtagacaggttgcggaaatgtatcggaagcaggagagtgttacgaagaataag
ggaccggctgttgatgatgactttgagtattga

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