KEGG   Granulicella mallensis: AciX8_1368Help
Entry
AciX8_1368        CDS       T01664                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
gma  Granulicella mallensis
Pathway
gma03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AciX8_1368
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gma03400]
    AciX8_1368
Enzymes [BR:gma01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AciX8_1368
DNA repair and recombination proteins [BR:gma03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AciX8_1368
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AEU35711
UniProt: G8NZZ5
LinkDB All DBs
Position
complement(1590562..1593324)
Genome map
AA seq 920 aa AA seqDB search
MAPTKKAVSRKPASKKTAAKRTPHKTHASAADAVDEQLARYREMRDFKVTAEPSGKGKST
KAKASGLPFVIQKHAASHLHYDFRLGWNGVLKSWAVAKGPSYFTGDRRLAVQVEDHPMEY
GGFEGIIPKGQYGGGTVMVWDQGTWEPQPGHEDVDAGLREGSLKFVMHGTKMTGKWTLVR
MGGKAANERKPNWLLIKEHDEFERGKDDPSITDEAPDSAVTGRTLDQIAGQEDHVWNSKD
TARGKAWHRQKPAAPEKKAQSPRSPKAKNDAALKDLPRETQPAFLSPQLALEATGPPGKE
GWLHELKLDGYRIQARKSGSDVQLLTRKGLDWTHRMPAIAKDITKLPAENATLDGEVVVV
SENGTTSFANLQASFQDGEKHPLTYFCFDLLHLNGRNTRGLSLRERKALLAEILGEGIGS
VHLSEHIETGGESMFHQACELHAEGIISKWGASTYSSGRSGEWLKSKCLREQEFVIGGYT
LSSEGPDRIGSLLLGYYRDGKLIYSGRTGTGFTQKTRRTLRKQLGDLENRSMPFARVPVD
GRRDAIWVKPKLVAQVRFATWTADNLVRQAAFLGLREDKPAKEVQREEATVAPQPKGTSK
RPAKTAPVVATHRAAVPIAAKTATKTATTGSIRLTHPDKILDAESGLTKADLSAFYQGVA
EHMLPHIADRPLSLVRCPEGTGKPCFFQKHVNHMLPPGVGGIDVPNKKTGEPEPYITLNT
TEALINLAQMGVLEVHPWGSRNDDLEHPDRLIFDLDPDESLPWSTLCDAAAEVRKRLKKA
GLESFLKTTGGKGLHVVAPIQPELDWPQLKALAHKFVESMERENPTLYLTKMTKSARKGK
IYLDYLRNERGATAVAPYSPRARAGAHVSLPLPWSALKLPERPVYSVKNFDEWRSRLRND
PWKAMLTTRQKLDPASFEQA
NT seq 2763 nt NT seq  +upstreamnt  +downstreamnt
atggcgccaacaaaaaaagccgtgtcgcggaagccagccagcaaaaaaacagccgctaag
aggaccccgcacaaaacacacgcctcggctgcggatgccgtcgatgaacagcttgcgcgt
tatcgcgagatgcgtgacttcaaggtcacagccgaacccagcggcaaaggcaaatctacg
aaagccaaagcctccggccttccgttcgtgattcaaaagcacgctgcgagccacctgcac
tacgacttccgcctcggctggaacggcgtgctgaagagctgggcggtcgcgaagggcccc
agctacttcaccggcgaccgccggctcgcggtccaggtagaagaccatccgatggagtac
ggtggcttcgagggcatcatccccaaagggcaatacggcggcggcaccgtcatggtgtgg
gatcagggcacgtgggagccgcagcccgggcacgaggacgtcgatgccggtctgcgcgaa
ggcagtctgaagttcgtgatgcatggcacaaagatgacgggcaagtggacgctcgtgcgc
atgggtggcaaagccgccaacgagcgcaagccgaactggctgctcatcaaggagcacgac
gagttcgaacgcggcaaggacgatccctccatcaccgacgaagcgcccgactccgccgtg
actggccgcacactggatcagatcgcaggacaggaagaccacgtttggaactccaaggac
accgcacgcggcaaggcctggcacagacagaaacccgctgcaccagaaaaaaaggcgcaa
tccccgagatcgccgaaggcaaagaatgacgctgcgctcaaagatctacccagggagacg
caacccgcatttctttcgccgcagctcgcactcgaggctacaggacctcccgggaaagag
ggctggctgcatgagctgaagctcgacggctatcgcatccaggcgcgcaaatctggcagt
gacgttcagctgctcacacgcaagggtctcgattggacccaccgcatgcccgctatcgcg
aaggacatcacgaagctgcccgccgagaacgcaacactcgacggagaggtggtcgtggtc
agtgaaaacggcaccaccagcttcgccaatctgcaggcctcatttcaggatggagagaag
catcctctgacctacttctgcttcgacctgctgcacctcaacggccgcaacacccgaggt
ctgagcctgcgcgaacgcaaagctctgctagcggagattcttggcgaaggcatcggctca
gttcacctgagcgagcacatcgagaccggcggcgaatccatgttccaccaggcctgcgag
cttcatgcagaaggcatcatctccaagtggggcgcttcgacatactcctccggccgcagc
ggggagtggctcaagtccaaatgccttcgcgaacaggagttcgttatcggtggctataca
ctctcctccgaaggcccggaccgcatcggctcccttctcctgggctactaccgcgacggc
aaactaatctattcaggccgcacgggcacaggctttacacaaaagacaagacgcacgtta
cgcaaacaacttggtgatttagaaaacaggtccatgcccttcgcccgagttcccgtagat
gggcgcagagatgctatctgggtgaaacctaagctcgttgcgcaggtccggtttgccacc
tggacggcggacaatctcgtgcgtcaagccgcatttcttggattgcgcgaagacaaaccc
gctaaggaagttcaacgggaagaagcaaccgtcgcacctcagcccaaaggaacatcgaag
cgtccagcgaaaactgcacccgtagtagccacgcatcgagcagccgtacccatcgccgcc
aagacagcgacgaaaacggcaacaacaggttcgatacgtctcacccatccggacaagatc
ctcgacgctgagagcggcctcaccaaggcggacctatccgcgttctaccagggcgtcgcc
gagcacatgttgccgcacatcgccgaccggcctctcagccttgtgcgctgtcctgagggc
acgggcaaaccctgtttcttccaaaagcacgtcaatcacatgctgccgccgggtgtcgga
ggcatcgacgtcccgaataaaaagaccggagagccggagccctacatcacactcaacaca
acggaagcgctcatcaacctggcacagatgggcgtgctggaagtgcatccgtggggttcg
cgcaacgacgatctcgaacatcctgaccggctgatcttcgacctcgatccagatgaatcg
ctgccatggtcgacgctctgcgacgcagcagcggaggtccgcaaacgcttgaagaaagca
ggcctggaaagctttctaaagaccaccggcggcaaaggattacacgtcgtcgctcccatc
cagcccgagttagattggccacagctcaaagcgctggctcacaagttcgtcgagagcatg
gaaagagagaatcccacgctttatctaacgaagatgaccaagtccgcgcgcaagggaaag
atctatctcgactatctgcgcaatgaacgcggggcaaccgcagtcgctccctactcgcca
cgcgcccgtgcgggagcgcatgtttcgctgcccttaccgtggtccgcgttgaagctcccg
gagcgtcccgtgtactccgtcaagaacttcgacgaatggcgctcgcgactccgcaacgat
ccatggaaggcgatgctgacgactcgtcagaagctcgatcctgcaagttttgagcaggca
tga

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