KEGG   Geobacter metallireducens: Gmet_0928Help
Entry
Gmet_0928         CDS       T00295                                 

Gene name
mrdA
Definition
(GenBank) peptidoglycan transpeptidase
  KO
K05515  penicillin-binding protein 2 [EC:3.4.16.4]
Organism
gme  Geobacter metallireducens
Pathway
gme00550  Peptidoglycan biosynthesis
gme01501  beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:gme00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    Gmet_0928 (mrdA)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    Gmet_0928 (mrdA)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:gme01011]
    Gmet_0928 (mrdA)
Enzymes [BR:gme01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     Gmet_0928 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:gme01011]
 Peptidoglycan biosynthesis and degradation
  DD-Transpeptidase (Class B PBP)
   Gmet_0928 (mrdA)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Transpeptidase PBP_dimer
Motif
Other DBs
NCBI-ProteinID: ABB31170
UniProt: Q39X54
LinkDB All DBs
Position
1021564..1023495
Genome map
AA seq 643 aa AA seqDB search
MNGKAYIRQPNDPRKQKQIIILSCFVAALFFLLLTRLWYLQIVKAEDFQNKSESNRLRLV
PVAASRGTIFDRNGTVLVSNRPSFSVAVIPQEVKDRDALLDQLSAYLDIDRAELLEKWEK
GKGRARYHPIVLASGITRDQLELLEEKRLWLPGLEIEVKPVRQYEAGVLASHLLGYLGEV
SDDELKSDAYAGYNSGDYIGKSGIERNWERVLHGKDGGRQIEVDARGRILRTLSETPPTV
GSSLVLTIDAELQKRTEQSFGEQAGAAVVMDVNTGDILAFASNPDFDPALFTGRMPPEKW
KEYLEDKRHPLENKALKGQYPPGSTFKIITALAGLEEGLIDEKTSVVCRGTYTLGASKFG
CWERKGHGTVNLRRALKESCDVYFYQLGERLGINKIAAYARALGMGSPMGVGLDNEKGGL
IPTSEWKEKRHKKKWLQGDTLPAAIGQGYVLMTPIQLASMIATVATDGVVYRPHLVKRII
DQDGRALQEFKPEVIARPRISARSFRLVKEGLSAVVNDPGGTGARARLYQVQVAGKTGTS
QVVKLRDNRGGIPYQYRDHALFVAFAPYDKPEVAVAVVIEHGEHGGSAAAPIAGNILRAY
FEGKGSIRKPVRKDVPSETGEQAGQETPASEQGGSASQGQQEQ
NT seq 1932 nt NT seq  +upstreamnt  +downstreamnt
atgaacgggaaggcctacatccggcagcccaatgatccccggaagcaaaagcagataatc
atcctgtcatgcttcgtggccgcactcttctttctgctcctgacccggctctggtatctc
cagattgtcaaggccgaggattttcagaacaagtccgaaagcaaccggctccgccttgtt
cccgtggcggcgtcccggggaaccatctttgatcgcaacggcacggtgctcgtcagcaat
cgcccctcgttcagcgttgccgttattccccaggaggtgaaggaccgcgatgccctcctg
gaccagctctctgcatatctcgacatcgaccgggccgagctcctggaaaaatgggaaaag
ggcaagggtagggcccggtaccatcccatcgtcctcgcttcggggattacccgggaccag
cttgagctgctggaggagaaacgtctctggcttccggggcttgagattgaggtcaagccg
gtgcgccagtacgaggcgggagtgctcgcttcacacctccttggctatcttggcgaggta
tccgatgatgagctgaagtccgatgcctatgccggttataattcgggtgattacatcggt
aagagcggtattgagcgcaactgggagcgggttctccatggtaaggatggcggccggcag
atcgaggtggatgcccggggcagaatcctgcggactctctccgagactcctcccacggtc
ggttcgagcctcgttctgaccatcgacgcggaactccagaaaaggaccgagcagagtttc
ggcgagcaggcgggtgcggccgtggtgatggatgtcaacaccggggatattcttgccttt
gccagtaatcccgatttcgaccccgccctcttcaccgggcggatgccccccgagaagtgg
aaagagtacctggaggacaaacgccaccccctggagaacaaggccctcaaggggcagtat
ccccccggctccaccttcaagatcattaccgcccttgcggggcttgaggaagggctcatc
gacgagaaaacctcggtcgtctgtagaggcacctacaccctcggcgcgagcaagttcggc
tgctgggagcgaaaaggtcacggcacggtgaatctgaggcgtgcgctcaaggagtcgtgc
gatgtctatttttaccagttaggtgaaaggctcggcatcaacaagatcgcagcctatgcc
cgggcgctcggtatgggttcccccatgggggtcgggctggacaacgagaagggcgggctt
atccccacctcggagtggaaggagaaacgccacaagaagaaatggctccagggggatacg
cttcccgctgccattggccaggggtacgttctcatgacgcctatccagcttgcgtcaatg
attgctaccgtcgccaccgacggtgttgtctaccgtccccaccttgtcaaacgcatcatc
gaccaggacggcagggccctccaggagttcaagccggaggtcattgccaggccacgaatc
agtgccaggagtttcagactggtaaaggaggggctttccgccgtcgtcaacgatcccggg
gggaccggtgccagggcgcggctctaccaggtgcaggtagcgggtaagaccggtacgtcg
caggtggtgaagctccgtgacaacagaggggggatcccctatcaataccgggaccatgcc
ctcttcgtcgcatttgccccttacgacaaacccgaagtggcggtggccgtggttattgag
catggcgagcacggcggctccgcagcggctcctatagcggggaacatcctcagggcctat
ttcgagggaaagggatccatcaggaaacccgtcaggaaagatgttcccagcgagacggga
gagcaggcagggcaggaaacaccggcatccgagcaaggcggcagtgcgtcgcaaggacag
caagagcaatga

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