KEGG   Gemmata massiliana: SOIL9_23530
Entry
SOIL9_23530       CDS       T06634                                 
Name
(GenBank) rna helicase : ATP-dependent RNA helicase RhlE OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rhlE PE=3 SV=1: DEAD: Helicase_C
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
gms  Gemmata massiliana
Pathway
gms03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gms00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SOIL9_23530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gms03019]
    SOIL9_23530
Messenger RNA biogenesis [BR:gms03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SOIL9_23530
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_30 AAA_19 AAA_22
Other DBs
NCBI-ProteinID: VTR95361
UniProt: A0A6P2D246
LinkDB
Position
1:5511107..5512372
AA seq 421 aa
MPFKALGLHPLLVRATQELGYKEPTPVQAGSIPPGLAGRDIIATAQTGTGKTAAFLLPIL
HRLIGQPRGGTRVLILSPTRELAEQISEVCNGLAKHTQVRSALVVGGRPMGPQERALRAG
TDIIVATPGRLLDFIQRNVAKFDRATTLVLDEADSLFDMGFLPDVRKIIARMPARSHTLL
FSATMPPVIAKLANEILRTPATVQIGRRSSTAVGITQAAYPVPTHLKTALLRHLLRETDM
PSVLVFTRTKHGAKKIARAVASDGFTVAELHSNRTPSQRTTAMEGFRRGKYQVMVATNIA
ARGLDVNHITHVISTDVPDVPEDYVHRIGRTGRGGATGDAFILVSRDEEESLARIERQVG
QRLPRITLPDFDYTVSTPAPAQPKPGNKGSNGNRPAPNNGQQRPQKPKGKRNGPGKPGPR
R
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcccttcaaagctctcggtttgcacccgctcctcgttcgcgccacccaggaactcggg
tacaaggagccgacccccgttcaggccggctcgatcccccccgggctcgccgggcgcgac
atcatcgccacggcccaaaccgggaccgggaaaacggccgcgttcctgttgccaatcctc
catcggctcatcgggcaaccgcgcggcggcacccgggtgctgatcctgtcccccacgcgc
gaactcgcggagcagatcagcgaggtgtgcaacggactggcaaaacacacacaagttcgg
agcgcgctggtggtcggcgggcgcccgatggggccacaggaacgggcgctccgtgcgggc
acggacatcatcgtcgcgacccccggtcgcttgctcgatttcatccagcgcaacgtcgcc
aagttcgatcgcgctaccacactcgtgctggacgaggccgacagcctctttgacatgggg
ttcttacccgacgtcaggaaaatcatcgcgcggatgccggcgcgctcgcacacgctgctg
ttctccgcgaccatgcccccggtcatcgccaaactcgccaacgagatcctgcgcaccccg
gccacggtgcaaatcggccggcgcagttcaacggccgtgggcatcacgcaggccgcgtac
ccggtccccacgcacctgaaaaccgccctgctccggcacctgttgcgcgaaaccgacatg
ccgtcggtgttggtgttcactcgcaccaagcacggagcgaagaaaatcgcccgcgcggtc
gcgtccgacgggttcacggtcgcggaactgcacagcaaccgcaccccgtcccagcgcacc
accgcgatggaaggcttccgccgcgggaagtaccaggtaatggtcgcgacgaacatcgcc
gcccgcgggctggacgtgaaccacatcacccacgttatcagcaccgacgtgcccgatgtg
cccgaggactacgttcaccggatcgggcgcacggggcgcggcggggctacgggcgacgca
tttattctcgtatcgcgcgacgaagaagagtccctggctcgaatcgagcgccaggtcggt
cagcggctcccgcgaatcacgctgccggacttcgattacaccgtctcaactccggccccc
gcgcagccgaaacccgggaacaagggcagcaacggcaaccgccccgccccaaacaacggg
cagcaacgaccgcaaaagccgaaggggaaacgaaacggcccgggaaagcccgggccgcgc
aggtaa

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