Glycine max (soybean): 100806464
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Entry
100806464 CDS
T01710
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100806464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmx03041
]
100806464
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100806464
Spliceosome [BR:
gmx03041
]
Complex C
Other components
Step II factors
100806464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
IBR
AAA_19
AAA_22
ResIII
zf-RING_UBOX
zf-C3HC4_2
Helicase_RecD
zf-RING_2
HA2_N
Herpes_ori_bp
AAA_29
ABC_tran
AAA_30
Flavi_DEAD
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
100806464
NCBI-ProteinID:
XP_003537562
UniProt:
I1LNH6
LinkDB
All DBs
Position
11:38530073..38536668
Genome browser
AA seq
1736 aa
AA seq
DB search
MKKATNPNPFSTPRRHDFHRPPPPTHGCGWTPRPVHHRPYHQWRPRFHPHAARIDRPPEP
YFRVELRLGRCPLHRDDVEALIDECRSSHDSFTFYPTDDVAAVLNYRSWEQARDAVVWFW
EARLAEKHDFTPALDSNVVVVKDDVDCRLRPVFARHVKGLMMMEEGKEVKFGMDECERLA
KEISRLSSSLSKPLRIGTQNELMKKKKGLVDEKNLVERRLKEFESAMQCLLKYLEDGGDD
VEGVKVFRFDGGFDWKRIHCLIKRECRRLEDGLPIYAYRRDILQEIHYQQIMVLIGATGS
GKSTQLVQFLADSGVGSDKSIVCTQPRKIAAKAVAQRVQQESSGCYEGQSIKYCSTFLSS
REFDSRITFMTDHSLLQHYMSDNNLSGVSCIIIDEAHERSLNTDFLLTLLKSLLCRRVEM
RLIIMSATADAKQLSDYFFGCGIFHVLGRSFPVDIKYVPSDCGGDSGSAVVASYVSDVVR
MATEIHKTEKEGTILAFLTSQIEVEWACEKFQAASAVALPLHGKLSSDEQFRVFQNYPGK
RKVIFSTNLAETSLTIPGVRYVIDSGVVKDSRFDPSSGMSVLKVCWISQSSADQRAGRAG
RTEPGVCYRMYLEADYQSMDLNTEPEIRKVHLGVAVLRILALGVKDMQDFDFVDAPSPSS
IDMAIRNLIQLGAIELNNNAHDLTSEGWCLVRMGIEPRLGKLILGCFKHGLGREGIILAA
VMANASSIFCRVGSEFDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWEN
SINAKSIRRCQDTILELETCLEREHDIVTPSYWLWDPCMPSNHDKNLKRVILSSLVENVA
MYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAEKPSWVVFGELLSISNQYLVCVCAFDFQS
LFNLCPAPLFDVSKMEERKLLMKTLSGLGCILLKRFCGKANCDLLALVSRIRKACMDERI
FIEVNVDKNEIHLYATSNEMDIALGLVNGVLEYERKLLRTECMDKFLYHGSGFSPPVALF
GSGAEIKHLELEKRSLSVDVCHPNINEIDDRELLMFFEKNTSGCICAVHKFTGNMRDGDR
DKWGRIIFMSPDVVRRAAELDGQEFCGSSLKIVPSQLGWDKTFSFPAVKARISWPRRLSR
GFAIVKCDIKDVNYILRDFYNLAVGGRYVRCEIGKKSIDSVVINGLDKELSEAEIVDVLR
TATSRRILDFFLVRGDAAGNPPCSALEEALLKEIYPFLPKRNPHIIPCRVQVFAPEPKDS
FMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSIIFPTPVYHVIKEQ
LDEVLASFRNLKGLECNLGRTVNGSHRVKITANATRTVAEVRRPLEELLRGKTIEHDSLT
PVVFQLMLSRDGFSLKNSLQQETGTYILFDRHNLNLRVFGSPNKVALAQEKVIQSLLSLH
EEKQLEIHLRGMDLPPDLMKQMIKNFGPDLRGLKERVPGVDLTLNTRRHIVILHGSKELK
PRVEEIIFEIARSSHHLVERFENGPSCPICLCEVEDGYRLEGCGHLFCRLCLVEQFESAI
NNQGTFPVCCTHRDCGDPILLTDLRSLLFGDKLEDLFRASLGAFVATSGGAYRFCPSPDC
PSIYRVADPESAGEPFVCGSCYSETCTRCHLEYHPYLSCERYQEFKEDPDSSLKEWCRGK
EQVKCCSACGYVIEKVDGCNHVECKCGKHVCWVCLEFFSTSNDCYNHLRTIHLAII
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagctactaatcccaaccccttctccaccccccgccgccacgatttccaccgt
ccgccaccacccacccacggctgcggttggactccccgcccagtccaccaccgtccctac
caccaatggaggccccgattccacccccacgccgcccgcatcgaccgccctccggagcct
tatttcagggtggagctccgcctcggccgctgccccctccaccgcgacgacgtcgaggcc
ctgatcgacgaatgccgctccagccacgacagcttcactttctacccaaccgacgacgtc
gccgccgttctcaactaccggagctgggagcaggcgcgcgatgccgtcgtctggttctgg
gaggcgcggctcgcggagaagcacgatttcacgccggcgttggattccaacgttgtcgtc
gtcaaggacgatgtggattgtcgccttcgaccggttttcgcgaggcacgtgaaagggttg
atgatgatggaagaaggtaaggaggtgaagtttgggatggatgagtgtgaacggttggcg
aaagaaatttctcggctttcgagttcgctgagtaagcccttgcgaattggcacgcaaaac
gagcttatgaagaagaagaaagggctcgttgatgagaagaatctggttgaaaggaggttg
aaggagtttgagtctgcgatgcagtgtttgttgaagtatttggaggatggcggtgatgac
gtggagggtgttaaggtgtttaggtttgatggaggttttgattggaagcggattcactgt
cttatcaaaagggagtgtcggaggcttgaggatgggttgcctatttatgcttaccggagg
gatattcttcaggaaatacattatcagcagataatggtattaattggagcgactggttca
gggaagagtacgcagctggtacagtttcttgctgattcaggcgttggttctgacaaatcc
attgtatgcacccaacctcgcaagattgctgccaaagcagtggctcaaagggtccagcaa
gaaagcagtggatgttatgaaggccaatcaatcaaatattgttctacatttttatcctcg
cgtgagtttgattccaggataacattcatgactgatcattctttattgcagcactacatg
agtgataataatttgtctggggtctcgtgcatcataattgatgaggctcacgagaggagc
ttaaatacagattttctgttgactttgttgaagagtttactttgtaggagggttgaaatg
cggcttatcattatgtctgctacagctgatgcaaagcagctatctgattacttttttggt
tgtggaatttttcatgtgcttgggagaagctttccggtggatatcaaatatgttccttct
gactgtggtggagattctggttctgctgttgttgcgtcatatgtttctgatgttgtcaga
atggcaactgagattcacaaaactgagaaagagggaactattcttgcctttttgacctct
cagatagaagtagaatgggcctgtgaaaagtttcaagctgcctctgcagtagctttgccc
ttgcatggaaaactttcatctgacgagcagttccgtgtttttcagaactaccctggaaag
agaaaagtgatattttcaacaaatcttgcagagacatcacttacaattcctggtgttagg
tatgtgatagattctggggtggttaaagacagcagatttgatcctagcagtgggatgagt
gtacttaaggtttgctggatcagccagagctctgctgatcaacgggctggtcgtgctggg
aggaccgagcctggtgtgtgctatagaatgtacttggaagccgattatcagtctatggac
ctaaatacagagccggagattcggaaagttcatcttggtgtagcagttctgagaatcctt
gctttaggagtgaaggacatgcaagattttgattttgtggatgctccaagtcctagctca
atagatatggcaatccggaatctaattcaattaggagccattgaactgaacaataatgct
catgatttaacttctgaaggttggtgcttggtgagaatgggaattgaacctaggcttggg
aaacttattcttggttgtttcaaacatggtttgggtagggagggtatcatccttgctgct
gtgatggccaatgctagtagcatcttttgcagagttggcagtgaatttgataagcaaaga
tctgattgtcttaaagtgcaattttgccattgtgatggtgacctctttactcttctctct
gtgtacaaggaatgggaagctttgcctcgagaaaggaagaacaaatggtgttgggaaaac
agcatcaatgccaaatccatcaggaggtgtcaagacacaattttggagttagaaacttgc
cttgagcgtgaacatgacattgttactccaagttactggctttgggacccttgtatgccc
tctaatcatgataagaatttgaaaagggtaatactgtcctcacttgttgagaatgtagcc
atgtactctggctgcaatcaacttggttatgaagtggcgcaaactgggcaacatgttcaa
ctacatccatcttgttcattgcttgtatttgctgagaaaccaagttgggtagtttttggt
gagcttctttccatttctaatcaatatttggtctgtgtgtgtgcatttgactttcaatct
ttattcaacctttgccctgctcccttgtttgatgtatccaaaatggaagagcggaagttg
ctaatgaagacactgtctggtctcggctgtattcttctcaagagattttgtggaaaagcc
aactgcgatttgcttgctcttgtttcacgtataaggaaagcttgtatggatgaacgcatc
ttcattgaagtgaatgttgacaagaatgaaatccacttatatgccacttcaaatgagatg
gatatagcccttgggttggttaatggtgttctagaatatgagaggaagttgttacgcacg
gaatgtatggataagtttttgtatcatgggtctggtttctctccacctgtagctttgttt
gggtctggtgctgagataaaacatttggaacttgagaaacgttccttgagtgttgatgtg
tgtcatccaaacataaatgaaattgatgacagggagctcttgatgttttttgagaagaat
acctctggttgcatctgtgctgtgcacaaattcacaggcaatatgagggatggagatagg
gataagtggggcaggataatatttatgtcccctgatgttgtcagaagagctgctgagcta
gatggacaagagttttgtggctcatccttgaaaattgttccttcacagttgggatgggat
aaaacattttcgttccctgctgttaaagcaagaatttcttggcctcgtaggcttagcagg
ggatttgccatagttaaatgtgatataaaggatgtcaattatatcttgagagatttctat
aaccttgcagtaggaggaaggtatgttcgatgtgaaattggcaaaaagagtattgacagc
gttgttataaatgggcttgacaaagagctttcggaagctgaaatagtggatgtgctaaga
actgctacaagtagaaggattttggattttttcttggtgagaggggatgctgctggaaat
ccaccatgcagtgctttggaagaggcactcctaaaagaaatttacccctttttgccgaaa
aggaaccctcacattattccttgccgagttcaggtgtttgcacctgagcctaaggattct
ttcatgagagctttgatcacttttgatggaagattacatttagaggcagcgaaagcattg
gagcaaattgagggaaaggtgttacctggatgtctttcatggcaaaagataaagtgccag
cagttgtttcatagctccattatatttcccactccagtgtatcatgtgattaaggaacaa
ctggatgaagtacttgcaagcttcaggaatttgaaaggtcttgaatgcaacctgggcagg
acagttaatggttctcaccgagtgaagataacggcaaatgccacaaggacagtggcggaa
gttagaagacctctggaagaactattgagagggaaaaccattgagcatgacagcctcacc
cctgtagttttccaactcatgttgtccagggatggctttagtcttaaaaactcattgcag
caagagacgggaacttatattctttttgacagacacaacttaaatttacgggtgtttggt
tccccaaacaaggttgctttggctcaggagaaggtgatacagtccctcctttctctccat
gaagaaaagcagttagaaattcatctgagagggatggatctacctcctgatttaatgaag
caaatgattaagaattttgggccagatctccgtggactgaaagagagggtacctggggta
gatcttacactcaacacacgtcgccatatagtcattcttcatggtagcaaggagttgaaa
ccgagagtagaggaaataatttttgagattgctcgttcaagccatcatttggttgagaga
tttgaaaatggacccagttgcccaatttgcttgtgcgaggttgaggatggataccggctt
gaaggctgtggtcatttgttctgccggttgtgtctggttgagcaatttgaatctgctatt
aataaccaaggcactttcccagtatgttgtactcacagggactgtggagatcccatcctg
cttacagatttgagatctcttttatttggtgataagttggaggatcttttcagggcttct
ttgggagcttttgtggcaacgagtgggggagcttacaggttttgcccttctcctgactgc
ccctcaatttatcgagttgcagatcccgagtctgctggtgagccatttgtttgtgggtct
tgttattcagagacttgtaccaggtgccacttagagtatcatccttacctttcatgtgag
agatatcaagaattcaaggaagatccggactcatctctgaaagagtggtgcagagggaaa
gaacaagttaagtgctgctcggcatgtgggtatgtaattgagaaggtagatgggtgcaac
cacgttgagtgcaagtgcggaaagcatgtctgttgggtttgcttagagttctttagtact
agtaatgactgttataaccatttgagaaccatacacttggccatcatataa
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integrated database retrieval system
