KEGG   Glaciecola nitratireducens: GNIT_2788Help
Entry
GNIT_2788         CDS       T01632                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
gni  Glaciecola nitratireducens
Pathway
gni03030  DNA replication
gni03410  Base excision repair
gni03420  Nucleotide excision repair
gni03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gni00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    GNIT_2788
   03410 Base excision repair
    GNIT_2788
   03420 Nucleotide excision repair
    GNIT_2788
   03430 Mismatch repair
    GNIT_2788
Enzymes [BR:gni01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GNIT_2788
    6.5.1.6  DNA ligase (ATP or NAD+)
     GNIT_2788
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     GNIT_2788
DNA replication proteins [BR:gni03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    GNIT_2788
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     GNIT_2788
DNA repair and recombination proteins [BR:gni03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     GNIT_2788
   NER (nucleotide excision repair)
    Other NER factors
     GNIT_2788
   MMR (mismatch exicision repair)
    Other MMR factors
     GNIT_2788
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AEP30885
UniProt: G4QIH1
LinkDB All DBs
Position
3089564..3090457
Genome map
AA seq 297 aa AA seqDB search
MIFYSKFSIAKAILLLLASFVLALFLATESAQAFNDTSLPNVQLAEVYDKQNVQDYLISE
KYDGVRAIWKDRTLQSRSGNIIHAPTWFTEGLPDVWLDGELWYRRGDFEYVVSTVNKDIP
VNSEWKNITYMVFDAPNYNADFQSRATFYTSLIQSLHLAHVKAVDQFSLTTNAELSAYLK
NYVAEGAEGLMLQKADAKFADGRSSNLLKLKPYMDAEARVLAHLEGKGKYRDKVGAILVL
YSNASGSKITFKIGSGFSDEERANPPPIGSVVTFKYHGFTKRGVPRFASYLRMYKPS
NT seq 894 nt NT seq  +upstreamnt  +downstreamnt
atgatcttttattctaaattctcaattgcaaaagcaatattgttattgttggcatctttt
gtattagcgctgtttttagcaactgagagcgcacaagcttttaacgacacaagcctaccc
aatgtgcagcttgcagaagtatatgataagcaaaatgtgcaagattaccttatcagcgaa
aagtatgacggcgttcgtgccatttggaaagatcgcaccctgcaatcgcgaagcggaaat
attattcatgctccaacttggtttaccgagggattaccagacgtttggctagacggtgaa
ttgtggtatcgaagaggagatttcgaatatgtggtttcaaccgtcaacaaagatattcct
gttaatagcgaatggaaaaacattacttacatggtgtttgatgcgccaaactacaacgcc
gactttcaaagcagagcaactttctataccagcttaatacagagtttacaccttgcgcat
gtaaaagccgtcgaccaatttagcttaactacgaatgcagagttatctgcttatttaaaa
aattatgtcgcagagggagctgaagggttaatgctacaaaaagctgatgccaaattcgcc
gatggacgcagtagtaatttgctcaagctcaaaccatatatggacgccgaagcacgggta
ttagctcacttagagggaaaaggtaaataccgggacaaagttggtgcgatactggtgctt
tattctaacgcgtcaggcagtaaaattacgttcaagattggtagcgggtttagtgatgag
gaaagagctaatccgccaccaataggcagcgttgttactttcaagtatcacggctttact
aaacggggcgtgcctcgttttgccagctacttgcgaatgtataagccatcgtaa

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