KEGG   Gordonia sp. YC-JH1: CXX93_03935Help
Entry
CXX93_03935       CDS       T05256                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
goc  Gordonia sp. YC-JH1
Pathway
goc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:goc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CXX93_03935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:goc03400]
    CXX93_03935
Enzymes [BR:goc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CXX93_03935
DNA repair and recombination proteins [BR:goc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CXX93_03935
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DUF150
Motif
Other DBs
NCBI-ProteinID: AUH67648
LinkDB All DBs
Position
complement(846617..848581)
Genome map
AA seq 654 aa AA seqDB search
MTRSHLDVDGRRIVLTNLEKVLYPETGTRKFDVVDYYIRIADAMVPHMASRPVTRKRWPG
GVESAPFFEKTLPAGAPDWVARFTIEHSERRTVYPVVRSAADLVWLAQVAALELHVPQWR
IDLSDDEERRTDRIVLDLDPGPGVTLDDCAAVALDIRAMLTDAGLESFPVTSGSKGIHVY
GRLASPVRSESARTVARQIATALAQAHPRTVTATMAKAERERRVFIDWSQNTAAKTTLAP
YSLRGRERPWVAAPRSWDELSESGLAHLLCTEVLDRYENDGDLLAGLSEASPPVQTTTVP
GDAVVDLGEYRKKRSSRSRRESVAPPPRESAPARDSEVDDPLPGLVGLRPMLATDDPIES
LTDDWAYEGKWDGFRALIRVVGGRVRLISRSGNDLTGDFPELSVFGDLLVSGGRPVDAVL
DGEIVAINDAGLTDFSLLASRRRRAEPHELRVHLFDVLYLDGVRVWEQPWEVRREILESL
DYFDGEPLIDVPPLLPGPAETAIRTARDRGWEGVIAKRRASSYASGRRSPDWRKQKNWND
IEVVIGGYRPGRGSESKIGSLLVGLPAERGLRYLGRVGTGFSDAELDALLEELRPLRISM
CPFIDDIDKPVAGSATWVLPKIVADVQFMDWTSTGHLRHPSWRGIRRDKLPGDL
NT seq 1965 nt NT seq  +upstreamnt  +downstreamnt
atgacgcgatcgcatctcgacgtggacgggcgcaggattgtgctgaccaacctcgagaag
gtgttgtatccggagaccgggacccgcaagttcgacgtcgtcgactactacatccggatc
gctgacgcgatggtgccgcacatggcctcgcgcccggtgacccgcaaacgctggccgggc
ggagtcgagtcggcgccgttcttcgagaagaccctccccgcaggcgcacccgactgggtg
gcccgcttcacgatcgagcactccgagcgccggacggtgtacccggtggtccggtcggct
gccgatctggtgtggctggcccaggtggccgcgctggagctccacgtgccgcagtggcgc
atcgacctgtccgacgacgaggagcgccgcaccgaccgcatcgtgctcgacctcgatccc
gggcccggcgtgacactggacgactgcgccgccgtggccctcgacatccgcgccatgctg
accgacgccggtctcgagtcgttcccggtcaccagcggttccaaggggattcacgtctac
gggcgcctcgcatcgcccgtgcggtccgaatcggcgcgcaccgtggcccgccagatcgcg
accgccctggcgcaggcgcacccccgcaccgtcaccgcgaccatggcgaaagccgagcgc
gagcgccgggtcttcatcgactggagccagaacaccgccgccaagacgacactcgcgccg
tactcgctgcgtggacgcgagcggccgtgggtcgcggcgccgcggtcgtgggacgaactg
tccgagtccggactcgcccatctgctctgcaccgaggtcctcgaccgctacgagaacgac
ggcgatctgctcgccggactgtcggaggcgagcccgccggtccagacgaccaccgttccc
ggcgacgcggtcgtcgacctcggcgagtatcggaagaaacggtcctcacgctctcggagg
gagagcgtcgcgccgcctccgcgagagagtgcgcccgcccgcgacagcgaggtcgacgat
ccgctgcccggtctcgtcggactccgcccgatgctcgccaccgacgacccgatcgagtcc
ctgaccgacgactgggcgtacgagggcaagtgggacggtttccgggcactgatcagggtg
gtgggcggccgggtccggttgatctcgaggtcgggcaacgacctcaccggcgacttcccg
gaactgtccgtgttcggtgacctcctggtctccggcggccgaccggtcgacgccgtgctc
gacggtgagatcgtcgcgatcaacgacgccgggctcaccgacttctcgctgctcgcatcg
cggaggcgcagagccgagccgcacgagctccgggtgcacctcttcgacgtcctgtacctg
gacggcgtccgagtgtgggagcagccgtgggaggtgcggcgcgagatcctggagtccctc
gactacttcgacggcgaaccgctgatcgatgtgccgccgctgcttcccgggccggcggag
accgcgatccgcaccgcacgggaccgggggtgggaaggggtcatcgcgaaacggcgggct
tcgtcctacgcgagcggacgccgcagccccgactggcgcaaacagaagaactggaacgac
atcgaagtggtgatcggcggctatcggcccggtcgcggctccgagtcgaagatcggatca
ctgctggtcggcctgcccgccgagcgcggcctgcgctacctcggccgggtgggcaccggt
ttcagcgacgccgaactcgacgcactgctcgaagaactccggcccctgcggatcagcatg
tgcccgttcatcgacgacatcgacaagcccgtcgcgggcagcgcgacgtgggtgctgccg
aagatcgtcgcggacgtgcagttcatggactggacgtcaacggggcacctgcgccatccg
agttggcgcggaatccgccgtgacaagctgccgggcgacctgtga

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