Gordonia sp. 135: GKZ92_10530
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Entry
GKZ92_10530 CDS
T06305
Name
(GenBank) AAA family ATPase
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
god
Gordonia sp. 135
Pathway
god03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
god00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GKZ92_10530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
god03400
]
GKZ92_10530
Enzymes [BR:
god01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GKZ92_10530
DNA repair and recombination proteins [BR:
god03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GKZ92_10530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QGP88045
UniProt:
A0A6I5ZE78
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All DBs
Position
2344896..2348345
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AA seq
1149 aa
AA seq
DB search
MRRPEPFDITAGLPEHTTVLEASAGTGKTYAIVGLAARYLADGVPISEMLLVTFSRAATA
ELRERMRARVRELLDVLADPAEVLSGPAQADDDALLRQLASGTPEEVRTRRGNLARALSD
FDASTIATTHTFCNRMLEALGFLGERELVHSIVEEVDELTEEVALDLYLRGFWASDSPEF
SFAEAREIARDAVRQASVALAPDERALADGPAADHVAARRVSFAKAVRQHVETRKRDARV
RTYDDLQAILHRIVNDDVVGDRACQRIRDTFSVVLVDEFQDTDPLQWDILRRCFHGHRRM
ILVGDPKQSIYGFRGAEVLSYLAAVSSADTLKALDVNRRSDGALVGALQHLYGEATLGHP
DIVARPVQAAFAGSRLEGRPPFRLRAFLRRDFGALNSFNLPGVKEVRSRIAADVADDIAN
VLAVGDHIDLNGVSRPVDPGDIAVLVRLNSTIEPLQRELAERGINSVIGSGVNVFSTSAA
QQWLWVLRAVEQPSRPDRVRMAALTALFGWSTARVATAAEPEVASLGAELSMLARVFAQG
GFAAMAQRLFDAHEVAARVLTVENGERTLTDLIQVSALCNKHVVETGEGLSALVEWLTER
ITDTSSRQRYEDQSRRLDRDTQAVQIMTVHASKGLQFPIVYVPYGWDGTWVNDRGNITYH
DESGTRRLDVGGQQAPDRAARRRRYADEVAGEDLRLLYVALTRAQSQVVAWWAPSRNTTT
GPLHRLIFGRENAIRSSTGDPEWTVAGEVPIPEADADCVGIMRTLAERDPSISVEPAGRL
DTDTVPPAAGDGDNPAALDIAHFDRRIDQDWRRTSYSALTADVAHGAHGSPGGPSTSVVE
TGSEPDDEVTDILDDEPVALPGDVAEDVETDSATMRHGMPSLMNGLPFGAAFGTLVHEVL
EYVDTSAPEIDAHVRELCSRALGALAGDIDPDRLVAALIGVLTTPLGFGNLWSIDPRDRL
AELDFELPLGPAGEAASDGGTTLDRLADLMEEHLPESDPLRAYADHLRAVPGRRLRGFLT
GSIDSVLRIPDGRYVIVDYKTNRIRPGDLVVEDFDAEAMAGEMIAAHYPLQAMLYSVALH
RYLRWRVPDYEPARHLGPVQYHFVRGMAGPDTPPGCGVFEWMLPAGLVVDLSDALAGAES
SAGTGGKIR
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgagacgcccggaacccttcgacatcaccgccggactgccggagcacacgacggttctg
gaggcgagtgccgggacggggaagacctatgcgatcgtcgggctcgcggcccggtatctc
gccgacggcgtaccgatctcggagatgctgctcgtcaccttcagccgggcggcgaccgcc
gaactccgggaacggatgcgcgcccgtgtgcgtgaactgctcgacgtcctcgccgatccc
gccgaggtcctgtccgggcccgcgcaggccgacgacgacgcactgctgcgacagctggcg
agcggcacaccggaggaggtccgcacgcgccgcgggaacctcgcccgcgcactgagcgac
ttcgacgcctcgacgatcgccaccacgcacacgttctgcaaccggatgctggaggcactg
ggcttcctcggcgaacgagagctcgtccactccatcgtcgaagaagtcgatgaactcacc
gaggaggtcgcgctcgacctctacctgcgcggcttctgggccagtgactcaccggagttc
agcttcgccgaggcacgggagatcgcgcgcgacgccgtccgccaggcgtcggtggcactc
gccccggacgagcgcgcactcgccgacgggccggccgcggaccatgtcgccgcgcgccgg
gtgagcttcgccaaggcggtccggcagcacgtcgagacccgcaagcgggatgcccgcgtg
cgcacgtacgacgacctccaggcgatcctgcaccggatcgtcaacgacgacgtggtcggc
gaccgtgcgtgccaacggattcgcgacaccttctccgtggtgctcgtcgacgagttccag
gacaccgatccgctgcagtgggacatcctccgccgctgtttccacggccatcgtcggatg
atcctcgtcggcgacccgaagcagtcgatctacggattccgtggtgccgaggtgctcagc
tacctcgccgcggtgtcgtccgccgacacgctgaaagcgctcgacgtcaaccgccgctct
gacggtgcactcgtgggagcccttcagcacctgtacggcgaagcgacactagggcatccg
gacatcgtggcgcgcccggtccaggccgccttcgccggcagccggctcgaaggccgtcca
ccgttccgactccgggcgttcctgcgccgggatttcggcgccctcaactcgttcaacctc
ccgggcgtcaaggaggtgcggtcacgcatcgccgccgacgtcgccgacgacatcgccaac
gtcctggccgtgggcgaccatatcgacctgaacggtgtgtcccggccggtcgaccccggc
gacatcgcggtcctcgtgcgcctcaacagcaccatcgaaccgctgcagcgggagctcgcc
gaacgcggcatcaactcggtgatcgggtcgggtgtcaacgtcttctcgacatcggctgcc
cagcaatggctgtgggtgctgcgtgccgtcgaacaaccgtcccgtccggaccgggtgcgc
atggccgccctgaccgccctcttcgggtggtccaccgcacgggtggcgaccgccgccgag
ccggaggtcgcctcgctcggtgccgaactgtccatgctcgcccgggttttcgcgcagggc
ggattcgccgcgatggcccagcgcctgttcgacgcgcacgaagtggcggcgcgcgttctc
acggtcgagaacggcgaacgcaccctcaccgacctcatccaggtgtcggcgctgtgcaac
aaacacgtcgtcgagaccggtgaagggctgagcgcactcgtcgagtggctgaccgaacgg
atcaccgacacctcgtcgcggcaacgttacgaggaccagagccgacgcctcgaccgcgac
acccaggccgtccagatcatgaccgtccacgcgagcaaggggttgcagttcccgatcgtc
tacgtgccctacgggtgggacggcacctgggtcaacgaccgcggcaacatcacctaccac
gacgaatcgggaacccgtcggctcgacgtgggcggccagcaggcaccggaccgggccgcg
cgacgccgtcgctacgccgacgaggtcgcgggcgaggatctgcgtctgctctacgtcgcg
ctcacccgcgcccagtcacaggtcgtggcctggtgggcgccatcgcggaacaccacgacc
ggaccgctgcatcggttgatcttcggtcgcgagaacgccattcggtcctcgacgggggac
ccggaatggacggtcgccggagaggtgccgatccccgaggccgatgccgactgtgtgggc
atcatgcgcaccctcgccgagcgggacccgtcgatctccgtcgaaccggccggccgactc
gacacggacaccgtgcctccggccgcaggcgacggagacaaccccgccgccctggacatc
gcgcacttcgaccgtcggatcgaccaggactggcgtcgcacctcgtactcggccctcacc
gccgatgtcgcccacggggcgcacggttcacccggtgggccgtcgacctcggtcgtcgag
accggcagcgaacccgacgacgaggtgaccgacatcctcgacgacgaacccgtcgcactt
cccggcgacgtcgccgaggatgttgaaaccgattcggccacaatgcgtcacgggatgcca
tcgctgatgaacggtctgccgttcggtgcggccttcggaaccctcgtccacgaggttctc
gaatacgtcgacacctcggcgcccgagatcgacgcccatgtccgcgagctctgttcgcga
gcactcggcgcgctcgccggcgacatcgaccccgaccggctcgtcgccgccctgatcggt
gtgctcaccacgcccctcggtttcgggaatctctggagcatcgaccctcgtgatcgcctg
gccgaactcgatttcgaactgccgctcggccctgcgggcgaggcggcatccgacggcggc
acgaccctggaccgtctcgccgacctgatggaagagcatctgccggagtcggacccgttg
cgcgcttacgccgaccacctgcgtgcggtgccgggccgccgcctccgcggattcctcacc
ggcagtatcgactcggtgctgaggatccccgacggccgctacgtgatcgtcgactacaag
accaaccgcatccgaccgggtgacctggtggtggaggacttcgacgccgaggccatggcg
ggcgagatgatcgctgcccactatccgctccaggccatgctgtattcggttgcgctgcat
cggtatctgcgctggcgggtgccggactacgagccggcccggcatctcggaccggtgcag
taccacttcgtgcgcggcatggccgggcccgacaccccgcccggctgcggtgtcttcgag
tggatgctgcccgccgggctcgtcgtcgacctgtccgacgcactggccggtgcggagtcg
agcgccggtaccggagggaagatccgatga
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