KEGG   Gordonia sp. KTR9: KTR9_4500Help
Entry
KTR9_4500         CDS       T02216                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
gor  Gordonia sp. KTR9
Pathway
gor03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    KTR9_4500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gor03400]
    KTR9_4500
Enzymes [BR:gor01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KTR9_4500
DNA repair and recombination proteins [BR:gor03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     KTR9_4500
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AFR51104
UniProt: J9SQC7
LinkDB All DBs
Position
5147970..5150351
Genome map
AA seq 793 aa AA seqDB search
MAGGEILEVDGRRISITNLSKVLYPATGTRKFEVIDYYSRIADVLLPHVRNRLITRKRWP
NGVESTPFFEKNVPESAPEWIRRHGIQHSERVISYAMADDRATLVWLAQMAVLEIHTPQW
RLPMGPDGAPMANRIVFDLDPGPRVPLHRTAEVACEIRNWLGGATTYPVTSGGKGIHLYA
RLPKPVTSDAARKVAQEVANEFARQHSDFITAKMSKSLRDDKVFIDWSQNNAAKTTLAPY
SLRGREQPWVAAPRTWEEMEDPKLSQLLYTEVLDRVDEFGDLLDGLDDPYRDADDGGSEP
VVEPAAGQVINLKEYRRKRDQSKTPEPFGDEVYRQRVESESPSDEPDSTDSPTDRAPIFV
IQEHHARRLHYDFRLEHDGVLVSWAVPKNLPTDPDQNRLAVQTEDHPMDYADFEGDIPAG
EYGGGHVSIWDKGTFELEKWRDKEVIVRLHGERVQGRYALIRTGEKNWLAHLMSDEPRPI
VPDSLTDPRPMLATDESIDGLNGRDWAFEGKWDGYRLLIRSVGGDFRLTSRSGIDMTADF
PELAGLADDLGLMDVVLDGEVVAIDSSGRTNFTLLTSRRHTDEPYALRLHLFDILFLNGS
SLLRKPWSVRRELLEELAPAFRNSAFVEVPPLLPGPGSAAVEYSREHNLEGVVAKRRNSV
YQQGRRSTTWLKHKNWSDIEVVVGGYRPGRGNRAHTIGSLLIGLPEETGLRYVGRVGTGF
TDAQLRSLAEELGPLEISRSPFLDKLDRPVESSAVWVLPKIVGEVRFMDWTTAGHLRHPS
WRGIRRDKLPGDL
NT seq 2382 nt NT seq  +upstreamnt  +downstreamnt
atggcaggcggcgagattctggaggtcgacggccgccggatctcgatcaccaacctctcg
aaggtgctctatccggcgaccgggacccgcaagttcgaggtcatcgactactactcgcgc
atcgccgacgtcctcctcccccatgtacgcaatcgcctgatcacccgcaagcggtggccc
aacggcgtcgaatcgaccccgttcttcgagaagaacgtccccgagagcgcgcccgaatgg
attcgacgccacggcatccagcacagtgaacgggtcatctcctatgcgatggccgacgac
cgcgccacgctggtctggctcgcccagatggccgtgctcgagatccacacaccgcagtgg
cggctccccatggggcccgacggagcgcccatggccaaccgcatcgtcttcgacctcgat
cccggtccacgggtgccgctgcaccggaccgcggaggtcgcgtgcgagatacgcaactgg
ctcggcggggcgaccacctacccggtgaccagcggcggaaagggcatccacctctacgca
cggcttcccaaacccgtgacgtccgacgcggcgcgcaaggtggcacaagaggtcgccaac
gagttcgcgcgccagcacagcgatttcatcaccgccaagatgtccaagtcgctgcgcgac
gacaaggtcttcatcgactggagccagaacaacgccgccaagaccaccctcgccccctac
tcgctgcgtggtcgcgagcaaccgtgggtggcggcgccgcgcacctgggaggagatggag
gacccgaagctctcccagctgctctacaccgaggtgctcgaccgggtcgacgagttcggc
gatctcctcgacggtctcgacgacccctaccgcgacgccgatgacggcgggtcggaaccc
gttgtcgagcccgcggcgggccaggtcatcaatctgaaggagtaccggcgcaagcgcgac
cagtcgaagacgcccgagcctttcggcgacgaggtgtaccggcagcgcgtggagtccgag
agtccctccgatgagcccgattccacggactccccgacggaccgggcaccgatcttcgtg
atccaggaacaccacgcccgacgcctgcactacgacttccgcctcgagcacgacggcgtc
ctggtgtcgtgggcggtgccgaagaacctgcccaccgatcccgatcagaaccggctcgcg
gtgcagaccgaggaccaccccatggactacgccgacttcgaaggcgacatcccggcgggc
gaatacggcggcgggcacgtgtccatctgggacaagggcacattcgagctcgagaagtgg
cgggacaaggaggtcatcgtccgcctgcacggcgagcgcgtccaggggcggtacgcgctg
atccgaaccggggagaagaactggctcgcccacctcatgagcgacgagccgcggccgatc
gtccccgacagcctcaccgatccacgcccgatgctcgcaaccgatgagtcgatcgacggt
ctcaacggccgcgactgggcgttcgaggggaagtgggacgggtaccggttgctcatccgc
tcggtcggcggcgacttccggctcacctcccgatcaggcatcgacatgaccgccgacttc
cccgaactcgccggtctcgcagacgatctcgggctcatggacgtggtactcgacggcgag
gtcgtcgccatcgactcctccggacgcaccaacttcaccctcctgacctcgcgccggcac
accgacgagccgtacgcgctgcggttacacctgttcgacatcctgttcctcaacggctcg
tcgctgctgcgcaagccgtggtcggtccggcgcgagctcctcgaggaactcgcacctgcg
ttccgcaactccgccttcgtcgaagttccgccgctgctccccggcccgggatcggccgct
gtcgagtacagccgcgaacacaatctcgaaggcgttgtcgccaaacgccgcaactcggtg
taccagcaggggcgccggtcgacgacctggctgaagcacaagaactggagcgacatcgag
gtcgtcgtcggcggatatcgaccggggcgcggcaaccgcgcgcacaccatcgggtccctg
ctgatcggtctgcccgaggagacgggactgcgctacgtcggtcgggtcggcaccggtttc
accgacgcccagctgcgttcgctcgccgaggaactcggcccgttggagatctcgcggtcg
ccgttcctggacaaactcgaccgcccggtcgagtcgagtgcggtgtgggtgctccccaag
atcgtcggcgaggtccgtttcatggactggacgacggccgggcacctgcgtcaccccagc
tggcggggaatccgccgggacaaactgcccggtgacctctga

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