KEGG   Gordonia polyisoprenivorans: GPOL_c05170Help
Entry
GPOL_c05170       CDS       T01719                                 

Definition
(GenBank) putative ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
gpo  Gordonia polyisoprenivorans
Pathway
gpo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gpo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GPOL_c05170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gpo03400]
    GPOL_c05170
Enzymes [BR:gpo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GPOL_c05170
DNA repair and recombination proteins [BR:gpo03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GPOL_c05170
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DUF4192 SfsA
Motif
Other DBs
NCBI-ProteinID: AFA71586
UniProt: H6MUZ9
LinkDB All DBs
Position
complement(613489..615927)
Genome map
AA seq 812 aa AA seqDB search
MASGQTLEVDGHTISVTNLAKVLYPSTGTRKFDVIDYYARIAEVMLPHLADRLVTRKRWP
NGVESTPFFEKSVPEGIPDWVTRRGVEHSSRIIEYVVADSPATLVWLAQMAALELHTPQW
RLPRDDALADFAAEGPKANRLVLDLDPGPGVTLAECGEVARDIHDMLDAAGLDSYPVTSG
GKGIHVYARFPTPVSADSARTVAKQIATSLAQQQPDRVTAIMAKSERPHKVFIDWSQNSA
SKTTLAPYSLRGREQPWVAAPRTWDEMADPDLTQLLYTEVLERIDEWGDLLDGLDDDGVP
AGPEESGDSAADAAQPESVSAEGGQVINLREYRRKRNAAVTPEPFGDTRFRDNEFTKSRS
GVDGARVSRENEPGGPIFVIQEHHARRLHYDFRLEHDGVLVSWAVPKNLPDDPDQNRLAV
QTEDHPMDYADFAGDIPAGEYGGGHVEIWDRGTYETEKWRDDEIIVRLHGERVQGRYALI
KTGDKNWLAHLMSDEPRPILPESLRDPRPMLATDESIEKLDSKDWAFEGKWDGYRLLVRY
IGGEFRLTSRSGLDMTADFTELACITDELGLIDVVLDGEVVALDATGRTNFTLLAGRRSA
DDDVTLKLYLFDLLYLNGTSLLRKPWSQRRELLEELAPAFRRSRYVEVPPLLPGPGAAAA
EYSREHGMEGVVAKRRSSTYQQGRRSNSWLKHKNWSDIEVVIGGWRPGRGNRAHTIGSLL
LGLPEETGLRYVGRVGTGFTESQLSALAEELEPLTIRRSPFLDKLDRPVAANAVWVLPKI
VGEVRFMDWTSTGHLRHPSWRGIRRDKLPGDL
NT seq 2439 nt NT seq  +upstreamnt  +downstreamnt
atggcgtccgggcagacactcgaggtggatgggcacaccatctcggtgaccaacctggcc
aaggtgctctacccgtcgaccggcacccgcaagttcgacgtcatcgactattacgcgcgg
atcgccgaggtgatgctcccgcatctggccgatcgtctcgtcacccgcaaacgctggccc
aatggcgtcgagtccaccccgttcttcgagaagtcggttcccgagggcatccccgactgg
gtgacccggcgcggagtcgaacacagcagtcggatcatcgaatacgtcgtggccgattca
cccgcaacactggtgtggctcgcacagatggcagcactcgagttgcatacgccgcaatgg
cgactgccgcgagacgacgcgctcgccgacttcgccgccgagggccccaaggccaaccga
ctcgtcctcgacctcgatccggggcccggggtcaccctcgccgagtgcggtgaggtcgcc
cgagacatccacgacatgctcgacgccgccggactggactcgtatccggtcaccagtggc
ggcaagggaattcacgtgtatgcgaggttcccgacgccggtgtcggcggattcggcgcga
acggtcgccaagcagatcgcgacctcgttggcccagcaacagcccgatcgggtcaccgcg
atcatggcgaaatccgaacggccccacaaggtgttcatcgactggagccagaacagcgcg
tccaagaccaccctcgctccgtattcgctgcggggccgcgaacagccctgggtggccgca
ccgcggacgtgggacgagatggccgatcccgatctgacgcagctgctctacaccgaggtc
ctcgagcggatcgatgagtggggcgatctcctcgacggactcgatgacgacggggtcccc
gccggcccggaggagtcgggtgattcggctgccgatgcggcacaaccggagtcggtctcc
gccgagggcggccaggtgatcaacctgcgcgagtaccggcgcaagcgcaacgccgcggtc
accccggagcccttcggtgacacaaggttcagggacaacgaattcacgaagtcacgatcc
ggggtggacggggcccgggtgtcgcgcgagaacgagccgggtgggccgatcttcgtgatc
caagaacatcacgcccggcgcctgcattacgacttccggctcgaacacgatggcgtgctg
gtgagttgggcagtaccgaagaacctgcccgacgatcccgaccagaaccgcctcgccgtg
cagaccgaggaccatccgatggattacgccgacttcgccggcgacatcccggccggtgag
tacggcggcgggcacgtcgagatctgggatcgcggtacctacgagaccgagaaatggcgt
gacgacgagatcatcgtccggctgcacggtgaacgcgtccagggccggtacgcgttgatc
aagaccggcgacaagaattggctcgcccacctgatgagcgacgaaccacgaccgatcctg
ccggagagtttgcgtgatccgcgcccgatgctggcaaccgatgaatccatcgagaagctc
gactcgaaggactgggccttcgagggcaagtgggacggttatcgcctcctggttcgttat
atcggcggcgaattccggctcacctcgcgctccggcctggacatgaccgccgactttacc
gaactcgcttgcatcaccgacgaactcgggctcatcgacgtcgtactggacggggaggtc
gtcgccctcgacgccaccggccgcaccaatttcacgctgctcgccggacgccgatcggcc
gacgacgacgtcaccctcaagctgtacctgttcgacctgctctacctcaacgggacgtcg
ctgctgcgcaaaccgtggtcgcagcggcgcgagctactcgaggagctcgccccggccttc
cggcgatcccgttacgtcgaggtaccgccactgctacccgggccgggcgccgcggccgcc
gagtacagccgtgaacatgggatggaaggcgttgtcgcaaaacgtcgttcgtcgacctat
cagcagggccggcgatcgaattcgtggctcaagcacaagaactggagcgacatcgaagtc
gtgatcggcggatggcggccgggccgtgggaaccgtgcgcacaccatcggctcgctgctg
ctcggcctgcccgaggagaccggattgcgctacgtggggcgggtcggcaccggcttcacc
gaatcccagctgagtgctctcgcagaagaactcgagccgctgaccatccggcggtcgccg
tttctggacaaactggaccggccggtcgcggcgaatgcggtgtgggtgctgccgaagatc
gtgggcgaggtgcgcttcatggactggacgagcaccggccatctacgacatccgagctgg
cggggaatccggcgcgacaaactccccggcgacctctga

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