KEGG   Gordonia polyisoprenivorans: GPOL_c20850
Entry
GPOL_c20850       CDS       T01719                                 
Name
(GenBank) putative ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
gpo  Gordonia polyisoprenivorans
Pathway
gpo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gpo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GPOL_c20850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gpo03019]
    GPOL_c20850
Messenger RNA biogenesis [BR:gpo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GPOL_c20850
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B_2 Lactamase_B
Other DBs
NCBI-ProteinID: AFA73124
UniProt: H6MYY3
LinkDB
Position
2367968..2369602
AA seq 544 aa
MVALGGIGEIGRNMTVFEYNGKLLIVDCGVLFPEDAQPGVDLILPDFRYIEDRMDDVEAV
VLTHGHEDHIGAVPFLLRLRGDIPVVGSKFTLALVAAKCREHRLRPKLIEVREGERTTHG
PFECEYFAVNHSIPDAIAVAIRTPAGLALHTGDIKLDQLPLDGRLTDLAGFSRLGDEGVD
LFLVDSTNAEVPGFVTPERQIGGVLDQVIGKARGRVIVASFASHVHRIQQIIDVAHTHNR
RVTFVGRSMVRNMQIAQDLGYLHVPDGVEVDMDTAATLPDHRVVLISTGSQGEPLSALSR
MARGEHRQINIRSADLVVLASSLIPGNENSVFAVVNGLAKLGATVITQQSAKVHVSGHAS
AGELLYLYNAVRPSNAMPVHGEWRHLRANAALAEATGVNPDRIMLAEDGVVVDLVDGQAQ
IVGRVPVGHVYVDGLSVGDVGESTLSERLVLGEGGFIAITVAVDSTTGRAVSTPEVSGRG
FSDDPDALKSAADLVDQVLDTLAAEGVSDTHRIAQGIRRTVGRWVADTYRRRPMIVPTVL
AVGD
NT seq 1635 nt   +upstreamnt  +downstreamnt
gtggtcgccctcggtggcatcggtgagatcggccgcaacatgacggtgttcgagtacaac
ggcaaactgctgatcgtcgactgcggggtgctgttccccgaggacgcgcagcccggcgtc
gacctcatcctcccggacttccgctacatcgaggaccggatggacgacgtcgaggcggtc
gtcctgacccacgggcacgaggatcacatcggtgcggtcccgttcctgctgcgtctgcgt
ggcgacatccccgtcgtcggatccaagttcacgctggcactcgtagcggccaagtgccgc
gaacatcggttgcgtcccaagctcatcgaggtccgcgaaggcgagcggaccacgcacggc
cccttcgagtgcgagtacttcgcggtgaaccactccatcccggatgcgatcgccgtcgcg
atccggaccccggccggactggccctgcacaccggcgacatcaagctcgaccagctgccc
ctcgacggccggctcaccgacctggccggattcagcagactcggcgatgaaggcgtcgat
ctgttcctcgtcgactccaccaacgccgaggtgccgggattcgtcacccccgagcggcag
atcgggggagtgctcgaccaggtgatcggcaaggcgcgtggccgggtcatcgtcgcctcc
tttgccagccacgtgcaccgcatccaacagatcatcgacgtcgcgcacacccacaaccgc
cgggtcaccttcgtcggccgctcgatggtccgcaacatgcagatcgcccaggacctcggt
tatctgcacgtgcccgacggtgtcgaggtcgacatggacaccgcggcaaccctgcccgac
caccgggtggtgctgatctccaccggatcgcagggtgagccgctctcggcgctgtcgcgg
atggcccgcggagagcaccggcagatcaacatccgctccgccgacctggttgtcctcgcg
tcgtcgctcatccccggcaacgagaactcggtcttcgcggtcgtcaacggcctcgcgaag
ctgggcgccacggtcatcacccagcagagcgccaaagtgcacgtctccggccatgcgtcg
gccggcgaactgctctatctctacaacgcggtccggccgagcaatgccatgccggtgcac
ggcgagtggcgtcacctccgcgcgaacgccgcgctcgccgaggccaccggggtgaacccg
gatcggatcatgctcgccgaggacggcgtcgtcgtcgacctcgtggacgggcaggcgcag
atcgtcggccgcgtcccggtcggccatgtctacgtcgacggtctgtccgtcggtgacgtc
ggtgaatcgacgctgtcggaacgactcgttctcggagagggcggattcatcgcgatcacc
gtcgccgtcgactccaccaccgggcgtgcggtgagcacccccgaggtttccggtcgcggt
ttctccgacgatccggacgccctcaagtccgccgccgacctcgtcgatcaggtgctcgac
acgctggccgccgagggcgtctccgacacccaccgcatcgcgcagggcatccgccggacg
gtgggccggtgggtggccgacacctatcggcgccgaccgatgatcgtgccgacggtgctc
gccgtgggcgactga

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