Gordonia polyisoprenivorans: GPOL_c20850
Help
Entry
GPOL_c20850 CDS
T01719
Name
(GenBank) putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gpo
Gordonia polyisoprenivorans
Pathway
gpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GPOL_c20850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpo03019
]
GPOL_c20850
Messenger RNA biogenesis [BR:
gpo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GPOL_c20850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
AFA73124
UniProt:
H6MYY3
LinkDB
All DBs
Position
2367968..2369602
Genome browser
AA seq
544 aa
AA seq
DB search
MVALGGIGEIGRNMTVFEYNGKLLIVDCGVLFPEDAQPGVDLILPDFRYIEDRMDDVEAV
VLTHGHEDHIGAVPFLLRLRGDIPVVGSKFTLALVAAKCREHRLRPKLIEVREGERTTHG
PFECEYFAVNHSIPDAIAVAIRTPAGLALHTGDIKLDQLPLDGRLTDLAGFSRLGDEGVD
LFLVDSTNAEVPGFVTPERQIGGVLDQVIGKARGRVIVASFASHVHRIQQIIDVAHTHNR
RVTFVGRSMVRNMQIAQDLGYLHVPDGVEVDMDTAATLPDHRVVLISTGSQGEPLSALSR
MARGEHRQINIRSADLVVLASSLIPGNENSVFAVVNGLAKLGATVITQQSAKVHVSGHAS
AGELLYLYNAVRPSNAMPVHGEWRHLRANAALAEATGVNPDRIMLAEDGVVVDLVDGQAQ
IVGRVPVGHVYVDGLSVGDVGESTLSERLVLGEGGFIAITVAVDSTTGRAVSTPEVSGRG
FSDDPDALKSAADLVDQVLDTLAAEGVSDTHRIAQGIRRTVGRWVADTYRRRPMIVPTVL
AVGD
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
gtggtcgccctcggtggcatcggtgagatcggccgcaacatgacggtgttcgagtacaac
ggcaaactgctgatcgtcgactgcggggtgctgttccccgaggacgcgcagcccggcgtc
gacctcatcctcccggacttccgctacatcgaggaccggatggacgacgtcgaggcggtc
gtcctgacccacgggcacgaggatcacatcggtgcggtcccgttcctgctgcgtctgcgt
ggcgacatccccgtcgtcggatccaagttcacgctggcactcgtagcggccaagtgccgc
gaacatcggttgcgtcccaagctcatcgaggtccgcgaaggcgagcggaccacgcacggc
cccttcgagtgcgagtacttcgcggtgaaccactccatcccggatgcgatcgccgtcgcg
atccggaccccggccggactggccctgcacaccggcgacatcaagctcgaccagctgccc
ctcgacggccggctcaccgacctggccggattcagcagactcggcgatgaaggcgtcgat
ctgttcctcgtcgactccaccaacgccgaggtgccgggattcgtcacccccgagcggcag
atcgggggagtgctcgaccaggtgatcggcaaggcgcgtggccgggtcatcgtcgcctcc
tttgccagccacgtgcaccgcatccaacagatcatcgacgtcgcgcacacccacaaccgc
cgggtcaccttcgtcggccgctcgatggtccgcaacatgcagatcgcccaggacctcggt
tatctgcacgtgcccgacggtgtcgaggtcgacatggacaccgcggcaaccctgcccgac
caccgggtggtgctgatctccaccggatcgcagggtgagccgctctcggcgctgtcgcgg
atggcccgcggagagcaccggcagatcaacatccgctccgccgacctggttgtcctcgcg
tcgtcgctcatccccggcaacgagaactcggtcttcgcggtcgtcaacggcctcgcgaag
ctgggcgccacggtcatcacccagcagagcgccaaagtgcacgtctccggccatgcgtcg
gccggcgaactgctctatctctacaacgcggtccggccgagcaatgccatgccggtgcac
ggcgagtggcgtcacctccgcgcgaacgccgcgctcgccgaggccaccggggtgaacccg
gatcggatcatgctcgccgaggacggcgtcgtcgtcgacctcgtggacgggcaggcgcag
atcgtcggccgcgtcccggtcggccatgtctacgtcgacggtctgtccgtcggtgacgtc
ggtgaatcgacgctgtcggaacgactcgttctcggagagggcggattcatcgcgatcacc
gtcgccgtcgactccaccaccgggcgtgcggtgagcacccccgaggtttccggtcgcggt
ttctccgacgatccggacgccctcaagtccgccgccgacctcgtcgatcaggtgctcgac
acgctggccgccgagggcgtctccgacacccaccgcatcgcgcagggcatccgccggacg
gtgggccggtgggtggccgacacctatcggcgccgaccgatgatcgtgccgacggtgctc
gccgtgggcgactga
DBGET
integrated database retrieval system