Paraglaciecola psychrophila: C427_2794
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Entry
C427_2794 CDS
T02535
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gps
Paraglaciecola psychrophila
Pathway
gps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C427_2794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gps03019
]
C427_2794
03009 Ribosome biogenesis [BR:
gps03009
]
C427_2794
Enzymes [BR:
gps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C427_2794
Messenger RNA biogenesis [BR:
gps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C427_2794
Ribosome biogenesis [BR:
gps03009
]
Prokaryotic type
rRNA processing factors
C427_2794
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
AGH44903
UniProt:
M4RQI2
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All DBs
Position
complement(2642936..2645548)
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AA seq
870 aa
AA seq
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MIKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGVSRRIEGDERTELK
AALSGLDLPDGMGLIVRTAGVGKTTEELAYDLDYLVSGWGRIKDMADSRSAPFLIHQESD
VVVRAIRDYLRRDIGEILIDNAVVHERALKHVEQMRPDYANRVKLYTGDVPLFSHYQIES
QIESAFQREVRLPSGGSIVIDPTEALISIDINSARATKGSDIEETAFNTNLEAADEIARQ
LRLRDAGGLVVIDFIDMTPVRHQREVENRMKDAVRGDRARVQLGRISRFGLLEMSRQRLR
PSLGDSANNVCPRCSGHGTVRGTESLALSVLRIMEEESIKDNTGQIEAQLPVNVATYLLN
EKRNSVRSVEKRHSVQLVIIPNPNMETPQYSVARRRPDDAVQEMSYNLPLIEQEENITDK
NVAPAMAKEQPALQSLIAPEQKKASPTTAVKSESLFDKASKWISGLFKAEEVVVPKKTTH
TRNQSTNPRQNRNARPDKNKRNNKNHERKENGEQSANRNERSDKNDRNERTDRKPRNDNR
KPRRDDKPVDATQDAEMVTKPNAPTPTAAPVKKKEQVAERRKRRDTRRSVRVDDINDEQN
KVVADVQETQAAIIENPETVVQNDAVVENKASTDQKTVATPQVDAEPASETTDAQAVSDT
NKDEESSPRTRSRRSPRHIRAAGQKRRKEGDEKDEAVKSETADASEVTQDELQFDEPVAA
PKVEKTPEVLVADEKPEQVAMELTSESVDVIDSPNPVTQPDEKHTLQESKAAVSESVKED
VAKPIKKEPAKKTPKKAASLKVTAKPVKKESVSAPMARPASIDDAFVDVKIGSLDDAARP
EVKRSGKSAVYSSSSNAAAAPATRPGSQSE
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaaggaaggccaagaagtcattattcagattgataaagaagaacgcggccaaaaa
ggcgcggctttaaccacctttattagtcttgcaggtagttacctagtgttaatgccaaac
aatcctcgtgctggcggtgtatctcgacgaatcgaaggcgatgagcgtactgaattaaaa
gcggcattgagcggtttagaccttccagacggcatgggtttgatcgtcagaaccgctggg
gttggtaaaacaactgaagaacttgcatacgatcttgattacttagtatcaggttggggc
cgcattaaagatatggccgactctcgctctgctcccttccttatccaccaagaaagtgat
gtagtagttcgtgctattagagattatctaagacgcgatattggtgagattctgattgat
aatgctgtagtccatgaaagagcattaaaacacgttgagcagatgcgcccagactatgct
aatcgcgtgaaactttatactggcgatgtacctttgttcagccattaccaaatcgaaagt
caaatagaatcagcgttccaacgtgaagtaaggcttccttcaggcggctcaatagtcatt
gatcctaccgaagcgttaatttcaatagatatcaactctgcccgagcgactaaaggtagt
gatatcgaagaaaccgctttcaataccaaccttgaagcggcagacgaaattgcacgccag
ctacgtttacgtgatgctggcggtttagtggttatcgactttatcgatatgacaccggtt
cgtcatcaacgtgaagtcgaaaaccgcatgaaagacgccgttagaggtgacagagcaaga
gtacaacttggccgtatttcacgctttggtttactagaaatgtctcgtcagcgtttacgc
ccttctttaggtgattcagccaataacgtgtgtccaagatgtagtggtcacggtacggtt
cgtggtacagagtctttagcattatcggtgctgcgtatcatggaagaagaaagcatcaaa
gataatacagggcaaatagaagcacagttacctgttaatgttgctacttatttattaaat
gaaaaacgtaattcagttcgtagtgtagaaaagcgtcatagcgtacagttagttattatt
cctaacccgaatatggaaacgccgcaatatagcgttgcacgtagacgcccagatgacgcg
gttcaggaaatgagttataacttgccattaattgaacaagaagaaaacattaccgataaa
aatgttgctcccgcgatggcaaaagaacaacctgcgctgcaaagcctgattgctcctgag
cagaaaaaagcatcccctactactgcagttaagtctgaaagcttatttgataaagccagc
aaatggatttctgggttgtttaaagcagaggaagtggtcgttcctaaaaaaacgactcat
actcgaaatcaatcaaccaatccgcgtcaaaacagaaatgcacgccctgataaaaacaaa
cgtaataacaaaaatcacgaacgtaaagagaacggtgagcaatctgctaatcgtaacgaa
cgctctgataaaaacgacagaaacgaacgtactgatcgtaaaccaagaaacgataaccga
aaaccacgtcgtgatgataaacctgtagatgcaacacaagatgcagaaatggtcacaaaa
cccaacgctccaacaccaacagctgcaccggtaaagaaaaaagaacaggtagcagaacgc
agaaaacgccgtgacacaagacgaagtgttagggttgatgatattaatgacgagcaaaat
aaagtcgttgctgatgttcaagaaactcaggcagccatcattgagaatcctgaaacagtg
gttcaaaatgatgcagttgtagagaataaagcgtctactgatcaaaaaacggttgcaaca
ccacaagtagacgcagaacctgcctctgaaacgacagacgctcaagcagttagcgacaca
aataaagatgaagagtcttcacctcgtactcgcagtcgtcgttctccaaggcatattcga
gctgcaggtcaaaagcgtcgtaaagaaggtgacgagaaagacgaagcagtaaaatctgaa
acagctgatgcgtctgaagtcacacaagacgagctacaatttgatgaacctgtagctgcg
cctaaagtcgaaaagacacctgaagtattggttgctgatgaaaaaccagagcaagttgcg
atggaattaacatctgaatctgttgacgttattgattcgccgaatccagttacacagcca
gatgagaaacacactttacaggaaagtaaagcggctgtttccgagtctgtaaaagaagac
gttgctaagccaatcaaaaaagaaccagccaagaaaacgcctaaaaaggctgcgtctttg
aaagtgacagcaaaaccagtcaaaaaggaatcagtttcagctcctatggctcgacctgca
tcaattgatgatgcttttgtagatgtcaaaattggttcacttgatgacgctgccagacca
gaagttaaacgctctggtaagtctgctgtatattcaagttcatcaaatgcagctgcggca
cctgcgactcgccctggttcgcaaagcgagtaa
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