Gossypium raimondii: 105799996
Help
Entry
105799996 CDS
T04129
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Module
gra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105799996
Enzymes [BR:
gra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
105799996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Beta_helix
ThermoDBP-RP_arch
Motif
Other DBs
NCBI-GeneID:
105799996
NCBI-ProteinID:
XP_012486284
UniProt:
A0A0D2S5S2
LinkDB
All DBs
Position
9:complement(43236679..43238251)
Genome browser
AA seq
393 aa
AA seq
DB search
MEQAAKSIVFLAFVLLFFASSGVADPLTYNVLNYGAKPDDNFDSTQALVAAWTLACGSIN
PATIYVPPGRFLVRNVVFRGQCKNNGIVFRIDGTLVAPSDYKVIGSTGNWLLFEHVNGVS
IYGGIIDGQGTGLWTCKRSGKGCPSGATSLGFSNSRNIVIRGLTSLNSQMYHIVINGCNN
VKVEGVRVSASGNSPNTDGIHVQSSSGVTILNTRIGTGDDCVSVGPGTNNLWIEKVACGP
GHGISIGSLGKEVEEAGVQNVTVKTVAFTGTENGVRIKSWGRQSSGFARNILFQHAVMTD
VQNPIVIDQHYCPDEKNCPGQVSGVKISDVTYQDIHGTSATEVAVKFDCSSEYPCSNIKL
EDVKLTYRNKAAEASCSNADGTASGFVQPSSCL
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggaacaggcagccaaatctattgtttttcttgcatttgttctacttttcttcgcttca
tctggggtagctgatccattgacttataacgttcttaactatggagccaaacccgatgac
aattttgactcaacccaagccttggttgctgcatggactttggcctgtggctccatcaat
cccgcaactatttacgtcccgcctgggaggtttttggtgcgcaatgttgtttttcgtgga
cagtgcaagaacaatggtattgtttttcgtatcgatggcacgcttgttgctccatcggat
tataaggttattggaagtaccggaaactggcttctctttgagcatgtaaacggtgtttcg
atttacggtgggataattgatggtcagggcactggcttatggacttgcaagaggtcaggc
aaaggctgtcccagcggggcaacgtccttaggcttcagcaattcgcggaacattgtaata
agaggattaacatcgctaaacagccaaatgtatcatattgtcatcaatggttgtaacaac
gtaaaagtggaaggtgtaagagtgtcagcctctgggaatagcccaaacaccgatggcatt
catgtgcaatcatcgagcggcgtcaccattctgaacaccagaatcggaacaggcgatgat
tgtgtctcggttgggcccggcaccaacaatttatggattgagaaggtggcatgtggacct
ggccatgggatcagcattgggagtcttgggaaggaagttgaagaagctggtgtgcagaat
gtgactgttaaaacagttgcatttactggcactgaaaatggggtgagaataaagtcatgg
gggagacaaagctctggttttgctaggaacatactttttcagcatgcagtcatgaccgat
gtccaaaaccccatcgtcattgatcaacattactgcccagatgaaaagaactgccctggt
caggtttcgggagtaaaaattagcgatgtgacataccaagacatccatggaacatcagcg
acagaagtagcagtgaagtttgattgtagctcagaatatccttgcagtaatataaagctg
gaggacgtgaagctcacttacagaaacaaagcagctgaagcatcctgtagtaatgctgat
ggaaccgcttctggttttgttcagccctcaagctgcttgtag
DBGET
integrated database retrieval system
