KEGG   Gossypium raimondii: 105803618Help
Entry
105803618         CDS       T04129                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
gra  Gossypium raimondii
Pathway
gra03030  DNA replication
gra03410  Base excision repair
gra03420  Nucleotide excision repair
gra03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105803618
   03410 Base excision repair
    105803618
   03420 Nucleotide excision repair
    105803618
   03430 Mismatch repair
    105803618
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gra03032]
    105803618
   03400 DNA repair and recombination proteins [BR:gra03400]
    105803618
Enzymes [BR:gra01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     105803618
    6.5.1.6  DNA ligase (ATP or NAD+)
     105803618
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     105803618
DNA replication proteins [BR:gra03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    105803618
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     105803618
DNA repair and recombination proteins [BR:gra03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     105803618
   NER (nucleotide excision repair)
    Other NER factors
     105803618
   MMR (mismatch excision repair)
    Other MMR factors
     105803618
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DRMBL DNA_ligase_A_C UBA_4 RMMBL Lactamase_B_2
Motif
Other DBs
NCBI-GeneID: 105803618
NCBI-ProteinID: XP_012491347
UniProt: A0A0D2SFT5
LinkDB All DBs
Position
7
AA seq 1406 aa AA seqDB search
MSSQGTATATKTLALDSTQLYLTAIDSSDSTLSFPPIPSSFPPSKLIPNTRFLVDSFRHS
TTTTFSAAYFLSHFHSDHYSGLSPSWSKGIIFCSHLTSLLLIQTLKIPPHFVFPLPLNDP
VVVDGCEVILIDANHCPGAVQFLFKVPTKNGSFERYVHTGDCRYCNSMKLNSYLNDFVGC
DTIFLDTTYCNPKFVFPSQEESVDYVVSVVDRIGKEFKEKKVLFLVATYVVGKEKILVEV
ARRCKRKIFVDGRKMEILNVLGYGGDKVFTVDESESNVHVVGWNVLGETRPYFRPNFVRM
KEIMEEKGYEKIVGFVPTGWTYEIKRNKFAVRSKGSIEIHLVPYSEHSNYDELREYVKFL
KPKRVIPTVGMDIEKLDSKHADKLRRHFAGLVDEMANKKDFLMGFHRGNYGSVEKVEMDA
SPNLNENKDMERKKNILEMKSVESKNADITLNDSSPVQKPDSQDSAIPSEEERERKIEEL
GDFLPRWVTRDQKLNLISSSRWNVVEAVSNFYEHENELYEQISAFRTSDSASAAQAGSSN
NSVSPLNSGPFRSSSHESLISHLSQASKPSSFKLSVRSNISPGKRKKNTENKSNKKVKSN
SKLESSGSKQPMITSFFGKVLVDDSKGGGTGLKIEECPKEEITLPGDLTKSFTEKIDQFI
QIINGNESSRNYVVNLLEKTQGDINRALDIYYSNPEVNHDENMENIVVSSKSAPVWSCSN
DCPVSKNEHVLEESRSIPDSSLQGQPVENVDVTLVSLPPDKYKPIEHACWRSDQPAPYVH
LARTFDLVGSQRGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAADHENIELNIGG
SLVTSALEEACGTNRSKIRDMYNDMGDLGDVAQACRQTQTLLAPPRPLLIRDVYSVLRKI
SVQTGSGSTMRKKNLIVNLIRSCREKEMKFLVRTLVRNLRIGAMMKTVLPALAQAVVMNS
SRDLCHEGTADCLKEKLQELSTAVTEAYNVLPNLDLLVPSLMKEGIAFSSSTLSMVPGIP
IKPMLAKITNGVPEVLELFQNKAFTCEYKYDGQRVQVHKLANGAVRVFSRNGDETTLRFP
DLINTIKESAKPAAQTFILDAEVVAIDRKNGHKLMSFQELSSRERGSKDSLITVDKIKVN
ICVFVFDIMFANGEQLLGVPLRQRRKCLKDLFHDEKLGHFEYAKEITVEADDACLTSEAT
FTQINSFLEDALQFSCEGIMVKALDTDAGYLPSKRSDTWLKVKRDYVEGLSDSLDLVPIG
AWHGNGRKAGWYSPFLMACYNPDTEDFQSVCRVMSGFSDSFYKEMKEFFSGDRILAKKPA
YYQTAEVPDMWFFPELIWEIRGADFTVSPVHQAAIGLVHPSRGISIRFPRFIRPVTDRNP
EECSTAADVAEMFHSQTRKMDVTAQQ
NT seq 4221 nt NT seq  +upstreamnt  +downstreamnt
atgtcatctcaagggacggccaccgccaccaaaacacttgcgctagactccacccaacta
tacctcactgccatagactcttccgattccaccctttcttttccccctatcccctcctct
ttccctccctctaaactcatacccaatacccgattccttgtcgactccttccgccactcc
accaccaccaccttctccgccgcctacttcctctcccacttccactccgaccactactcc
ggcctctccccttcctggtccaaaggcatcatcttttgttcccacctcacttccctcctc
ctcatccaaacccttaaaatcccgcctcatttcgtcttccctttacctctaaacgacccc
gttgtggtagatggctgcgaggtcattctcattgacgccaatcattgccccggtgctgtc
cagttcttattcaaagttcccacaaaaaatgggagctttgaaaggtatgttcacacgggt
gattgtcgttattgtaattcgatgaagttgaatagttatttgaatgactttgttggttgt
gatacgatttttttagatactacttattgtaatccaaaattcgtgtttccttctcaagaa
gaatcggttgattatgtagttagtgtggtagataggataggaaaggaatttaaggaaaaa
aaggttttgtttcttgttgccacttatgttgttggaaaagagaagattttggttgaggtc
gcgaggcgatgtaagaggaaaatatttgttgatgggaggaaaatggagattttaaatgtt
ttggggtatgggggtgataaagttttcaccgtagatgagagcgagagtaacgttcatgtt
gttggttggaatgtattaggcgagactcggccgtattttcggccgaattttgtgagaatg
aaagagattatggaggaaaaagggtatgagaagattgttggttttgtgccgactgggtgg
acttatgaaattaaacggaataaatttgcagtgaggtcaaaaggttcaatcgagatacat
ctagtcccttacagtgagcattctaattatgatgagcttagagaatatgtgaagtttttg
aaaccaaagagagttattcctactgttggtatggacattgagaagcttgacagtaagcat
gctgataaattgagaaggcactttgctggtctggttgatgaaatggcaaataaaaaggac
ttcctgatgggttttcatcgtggcaattatgggagtgtagaaaaagttgaaatggatgct
agtcccaacttgaatgagaacaaggacatggagagaaagaaaaatatattggaaatgaaa
tctgttgagagtaaaaatgcagatattactttgaatgattcatctcctgtgcagaaacct
gattcacaagattcagctataccgagtgaggaggaaagagagagaaagattgaggaatta
ggtgactttttgcccagatgggtgaccagggaccagaaattaaatttgatcagcagctca
agatggaatgttgttgaagcagtttctaatttttatgaacatgaaaatgagttatacgag
caaatctctgcttttagaacttctgattctgcctctgctgctcaggcaggttcatctaac
aactctgtctcacctttgaattcagggccctttagaagtagcagtcatgaaagtttaatc
agtcatttaagtcaagccagcaagccttctagttttaaactttcagttcggagtaacata
tctcctggtaaaaggaagaaaaatactgagaacaagtcaaataagaaagtaaaaagcaac
tcaaaactggaatctagcgggtcaaagcaacctatgataactagcttcttcggtaaagtt
ttggttgatgactctaaaggtggtgggactggcttgaaaattgaggaatgccctaaagaa
gaaatcactttgcctggtgacttgactaaatcatttacagagaaaatagatcagtttatt
cagataataaatggcaatgaatcgtcaagaaactatgtggtcaacttacttgagaagacc
caaggagatatcaacagggcactggatatatattatagtaatcctgaagtgaaccatgat
gagaatatggaaaatattgtagtttccagcaaatcagctccggtctggagctgtagtaat
gattgccctgttagcaagaatgaacatgtgctggaggagtcaagatctattccggattca
tctttgcaaggacaaccagtggaaaatgttgacgtaactcttgtatcattgcctcctgat
aaatataaacccattgagcatgcatgctggaggtctgaccagcctgctccatatgtccat
cttgcacggacttttgaccttgttggcagtcaaaggggcaagatcaaagctacttctatg
ctttgcaatatgtttaggagtttgctggccttgtcccccgaggatgtgcttcctgctgtg
tatctgtgcaccaacaaaattgccgctgatcatgaaaatattgaattgaatattggcggt
agtttggttacatctgcactggaagaagcttgtgggactaaccgttcaaaaataagggat
atgtacaatgacatgggtgatcttggtgatgttgcacaagcatgccgacaaacccaaact
ttacttgctcctccacgaccactattaattagggatgtatattctgtgcttcggaagata
agtgtacaaacaggcagcggcagcaccatgcggaagaaaaaccttatcgtgaatcttata
cgttcatgtagagagaaagagatgaagtttctagtgagaactttggtcaggaatttgcga
ataggagcaatgatgaaaactgttcttcctgcattggctcaagcagttgtcatgaattcc
tctcgtgatctttgtcatgaagggacagcagattgtctaaaagaaaagctccaggaactt
tctacagcagtaaccgaagcatataatgtacttccaaatttggatttgcttgttccttca
ctaatgaaggaaggtattgcattttcatcatcaaccttgtcaatggttccgggaatacct
attaaacccatgcttgcaaaaattaccaatggggttccagaagtactggagctttttcaa
aacaaagcttttacatgtgaatataaatatgatggtcagcgtgtccaggttcacaaattg
gctaatggagcagtgcgtgtcttttcacgaaatggggatgaaacaacattaagatttcca
gatttaattaatacaattaaagaatctgctaagcctgctgcccagactttcatattggat
gctgaggtagttgcaatcgataggaagaatggtcacaagctgatgtccttccaagaatta
tcttcaagagaaagagggagcaaagattctttgatcacagtggacaaaataaaggttaat
atttgcgtatttgtgtttgacatcatgtttgctaatggagagcagctgctaggtgttcct
ctacgccaaagaaggaaatgtttgaaggatttgtttcatgacgagaagttgggtcatttt
gaatatgcaaaagaaatcacagtggaagcagatgatgcttgtttgaccagtgaggccacg
tttactcagataaactcttttctcgaagatgcattgcagttctcatgtgaaggaattatg
gttaaagccttagatactgatgctggataccttccgtcaaaacgtagtgatacatggtta
aaggtgaagcgagactatgtggaaggattaagcgattcccttgatttagtcccaattggt
gcttggcatggcaatggaagaaaagcgggatggtacagccccttcctcatggcatgctac
aacccagacactgaagattttcaaagtgtatgtcgtgttatgtctggattctctgattca
ttttacaaagagatgaaagagtttttttcgggggataggatcttagccaaaaagccagct
tactatcaaacagctgaggtgcctgatatgtggttctttccagaacttatttgggaaata
agaggtgcagacttcactgtatcaccggttcatcaggctgcgatagggttagttcatcca
tcgcgtggcatctcaataagatttcctaggttcattcgcccggtcacagatcgaaatcct
gaggaatgtagcacggcagcagacgtagctgaaatgtttcattcgcagactcgaaagatg
gatgtgacagcccaacaatga

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