KEGG   Gramella sp. SH35: C7S20_09415Help
Entry
C7S20_09415       CDS       T05367                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
grs  Gramella sp. SH35
Pathway
grs03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:grs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C7S20_09415 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:grs03400]
    C7S20_09415 (ligD)
Enzymes [BR:grs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C7S20_09415 (ligD)
DNA repair and recombination proteins [BR:grs03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C7S20_09415 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C mRNA_cap_enzyme DNA_primase_S DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AVR45470
UniProt: A0A2R3Z5C5
LinkDB All DBs
Position
2060826..2063294
Genome map
AA seq 822 aa AA seqDB search
MSLDEYLKKRDFQRTPEPEGAVVNQEGRLRFVIQRHQATRLHYDLRLEMQGTLKSWAVPK
GPSMNPDHKRLAIQTEDHPIQYLFFKGTIPKGNYGAGEMDIWDEGYYQGAGGISKKQLLQ
QFIKGDLKIEFFGKKIKGTFALVKTKRGGEKDNQWLLIKKKDEYATDLDYNAEDFPPGQE
IKKPTEPKVKSIQPSETIEPMLATATKEIFNDPAWIYELKWDGYRMIANMKDGKVDLYSR
NGISFNSKFSRLVRDLEQIPHNTILDGEVVVVDKKGIPDFQKLQNYDEQTLGELRYYVFD
MLFLNGLSMMDLPLLQRKSLIEEVIEDTYHTFYCEHLEGMGKTFFQRAIDAGMEGVIAKK
ADSVYTPGYRSEKWLKIKEVKSTEAIICGYTESDNAGFRSLILGLFREGQLEYIGNCGSG
FSGAKHKELLKKFKPLEISESPFEKSINLKGRSPVWVKPELVCEVKYTEWTKGGHLRHPV
FKGLRADKTLPEITGEKVIDKPEEISASASKDANSDTSEAKPGHLKINNIDVPITNLEKI
YWPDSGYSKYDLIDYYLNISEYILPYLKDRPENLHRHPDGINSQGFFQKDNEGILPEWVE
TVKIHSKSSKKEIEYLLCQNEATLLYMANLGCIEINPWNSRLEELDKPDYAVIDLDPSDK
NTFEEVIEVAQVAKEILDAAQIEAYCKTTGSSGIHIYMPLGAAYTYDEARDFTKLICYFI
KERTGDLTSMERAVKNRKGKIYLDYLQNRRGQTLAAPYCVRPKPGAPVSAPIEWDELKSG
LQILDFNLKNMPERLKEKGDLFKGVLEKQIDMEAALARINEL
NT seq 2469 nt NT seq  +upstreamnt  +downstreamnt
atgagcttagatgaatatttaaaaaagcgcgattttcagcgtactcccgaacctgaaggt
gctgtagtaaaccaggaagggcgcttaagatttgtcattcagcggcatcaggccacacgt
cttcattacgatttacgcctggaaatgcagggcacgctcaaaagctgggctgttcctaaa
ggaccttccatgaatccagatcataaacgcctggctatccaaacggaagatcacccaatc
cagtatttattttttaaaggcaccatccccaaaggaaattacggcgcgggagaaatggat
atctgggatgaaggttattatcagggtgcaggcggaataagtaaaaaacagcttctgcag
cagttcatcaaaggagatctcaaaattgaattcttcggaaaaaaaattaaaggaactttc
gctttagtgaaaaccaaaagaggaggggaaaaagacaatcagtggttgcttataaagaag
aaagatgaatatgcgacagatctagattacaatgctgaagattttcctcccggtcaggaa
attaaaaagcccaccgagcctaaagtaaaaagcatacaaccttccgaaaccattgaacct
atgctggctaccgccactaaggagattttcaacgaccctgcctggatctatgaattgaag
tgggatggttaccgcatgatcgcgaatatgaaagacggtaaagttgacctctattcccga
aacgggatttcctttaattctaaattctcaagactggtgagggatctggaacaaattccc
cacaataccattcttgatggtgaggtagtggtagtagataaaaaaggaattcccgatttc
caaaaacttcagaattacgatgaacagaccttgggcgaacttcggtattatgtattcgat
atgctttttttgaacggtcttagtatgatggaccttccgctgttgcaaagaaaatcgctt
atcgaggaagtcattgaagatacctaccatactttttattgtgagcatctggaaggaatg
ggaaaaacttttttccaacgcgcgatcgacgccggtatggaaggagtgatcgccaaaaaa
gccgattctgtctatactcctggatatcgaagtgaaaaatggttaaaaataaaagaagta
aaaagtaccgaagctataatttgtggttataccgaatctgataatgccggatttcgctcg
ctgattttaggattatttagggaaggtcaattagaatatattggaaattgtggttctggt
ttttcgggagccaaacataaggagctattaaaaaaattcaagccacttgaaatttcggaa
agtccttttgagaaatctataaatctcaaaggaagaagtcctgtctgggtgaaaccggaa
ctggtctgcgaggtaaagtataccgagtggactaagggaggccatcttcggcaccctgta
ttcaaaggcttacgagccgataaaaccctgccggagatcacaggagaaaaagttattgat
aaacccgaagaaatttctgcttctgccagtaaggatgccaattcagatacttctgaagct
aaacccggacaccttaaaatcaacaatatcgatgttcctattacaaaccttgaaaagatc
tactggcctgattcgggttattccaaatatgatcttatagattattacctgaacatttcg
gaatatattcttccgtatttaaaagaccgtcccgaaaatcttcaccggcatcccgacgga
ataaacagccagggtttttttcaaaaagataacgaaggcattctgccggaatgggtagaa
actgtaaaaatccattctaaatcttcgaaaaaggaaattgaatatctgctttgtcaaaat
gaggcgaccctgctttatatggcgaatttgggttgtattgaaataaatccgtggaattca
cgcctggaggagctggataaaccagattatgcagtgatcgatcttgatcccagtgataaa
aatacttttgaagaggtcatagaggtggcgcaggtagcaaaagagatccttgacgccgca
caaatagaggcttattgcaaaactaccggttccagcgggatccatatttatatgccttta
ggagcggcatatacctatgatgaagccagggatttcactaaattgatctgttactttatt
aaagaaaggaccggcgatttaaccagtatggagcgggcggtaaagaatcgcaaaggaaaa
atttacctggattatttgcagaaccgtcgtggccaaacccttgctgctccttattgcgtg
aggcctaaacccggcgcgcctgtttccgcgcctatagaatgggatgaacttaaatcgggc
ctgcagattctggattttaatttaaagaacatgccggaaaggttaaaagaaaaaggagat
ctgtttaaaggcgtactggaaaaacagatagatatggaagcagccctggccaggatcaac
gagttgtaa

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