Glycine soja (wild soybean): 114423530
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Entry
114423530 CDS
T06057
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114423530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114423530
Enzymes [BR:
gsj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114423530
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114423530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
114423530
NCBI-ProteinID:
XP_028246126
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Position
8:complement(45038020..45044438)
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AA seq
718 aa
AA seq
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MKPHKLPSPSLSRALARALSSATITTHCGPAFPSKTVTTANFEPSLAELRHHVRCSDFVA
IDLEMTGVTSAPWRESLAFDRSDVRYLKVRDSAAKFAVVQFGVCPFRWDPSNHSFVAHPH
NFYVFPRQEIAGLGPCDEFLCQTTSMDFLAKYQFDFNACIHEGISYLSREQEREALRSLN
STYDNSEWSDIGKLKNVRDIPLLSTADILFTARMKNKFGEWRDGLFQEQNQEDQIQGISK
DSKFQVTFFEMHPALRLNGFTSHQLKLIQLVIRKHFKDLSYVSVNSETSGSQQLVVYTDS
KDELNLLLKKVKEENHRAEEKKIQAAVGFRHVIDLLSSEQKLIVGYNCFLDIAHVYSKFI
GPLPGSPDEFVASVNKCFPHIVDTIILLNTNLMFQEKMKRSRKSLASAFTLFCPQIAAGS
RSTDLGSLSHVKVDVEVDGSRSCSWNPGGKHEAGYDAFMTGCIFAQLCSDLGIDFKLRDS
SNQLALNEKLQKYVNRLYLSWIHGDIIDLNTGNKVADSSPSHSLKKRYPTILFENIVIIW
GFPSKLKANEVRECISKVFGPTSVVSVFHLDATAAFVQFSKTELVSDFLLVKDSLERSDG
AISVLHPLSKLLEGGNTCAANYDTYNEICGSPLSEGLFADQAKKVGIKWKTKLTECKVAS
RGEEHENPSLQANDVNTAMKNVEKTKPNTIDQLGNASSRGQVSTFEIEDSSRVAEANL
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctcacaaacttccttctccgtcgctctcacgtgcgctcgcacgtgccctaagc
tccgccaccatcaccacgcattgtggaccggcgtttccttcgaagaccgttaccactgcg
aacttcgaaccgtcgctggcggagctccggcaccacgtccggtgttcggacttcgtggcc
atcgacctcgagatgaccggcgtgacgagcgctccgtggcgcgagtccttggcgttcgac
cgctccgacgtgcggtacctgaaggtccgtgactccgccgccaagttcgccgtcgttcag
ttcggcgtttgccccttccgttgggatccctccaaccactccttcgttgcgcatccgcac
aatttctatgtttttcctcgacaagagattgcaggtttgggtccatgtgatgaatttctc
tgccagaccacttcaatggatttcttggctaaataccagtttgattttaatgcttgcata
catgaaggaatatcttatttatccagagaacaagaaagggaagcattaaggagtttgaat
tctacatatgataatagtgagtggtcagacattggtaaattaaaaaatgttagggacata
ccactgctcagcacggcggacattttgttcactgcaagaatgaaaaataaattcggtgaa
tggcgtgatgggttatttcaggagcaaaatcaagaagaccaaattcaaggaatttcaaaa
gactcaaaatttcaagtgactttttttgagatgcatccagctcttaggcttaatggattc
acgtctcaccagcttaaattgattcagttggtaatcagaaaacacttcaaagatctatca
tatgtcagtgtgaacagtgagacttctggttcacaacaattagttgtatatacagactca
aaggatgaattaaacttacttctgaagaaggtgaaagaagaaaatcacagggcagaagag
aagaagatccaagctgccgtgggatttcgccatgttattgatctcctttcatcagaacag
aagttgatagttggttacaattgttttttagatattgctcatgtctacagcaaatttatt
ggccctcttccggggagtcctgatgagtttgtcgcctctgttaacaagtgctttccacac
attgttgacaccattatactcctgaacactaatttgatgttccaagaaaagatgaaaagg
tccagaaaatcactggcctctgcattcactttattttgtccacaaattgcggctggctcc
agaagcactgatctaggttcactgtcacatgtgaaagtggatgttgaggttgatggttcg
agatcatgcagctggaaccctggaggcaagcatgaggcaggatatgatgccttcatgact
ggatgcatctttgcccagttatgcagtgatttaggtattgattttaaactccgtgattct
tcaaaccaattagccctcaatgagaaactgcagaagtacgttaatcgtctatatcttagt
tggatacacggggacatcattgatctaaatactggtaataaggttgcagattcttcaccc
agtcatagcctgaagaagcggtacccaacaattttgtttgagaacattgttattatttgg
ggatttccttctaagctgaaggcaaatgaagtaagagagtgcatatctaaagtatttgga
ccaacttctgtagtttctgtcttccacttggatgcaactgcagcattcgttcagtttagc
aaaactgaattagtttctgattttctattagtgaaggattccttagagagaagtgatggt
gcaatctcggttttgcatccactgtcaaaacttttggaaggtggaaatacatgtgctgcc
aattatgatacttacaacgaaatatgtggttcacccttatcagaaggtctgtttgctgat
caggcaaagaaagttggtataaagtggaagaccaaattaacagaatgcaaggtagcatcc
aggggtgaagaacatgaaaatccaagtttacaagctaatgatgtaaatacagctatgaag
aatgtagaaaagaccaagccaaacacaattgatcagttaggaaatgcttcatctcgtgga
caagtctcaacttttgaaattgaagattcttctcgtgttgcagaagccaacttgtga
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