Gynuella sunshinyii: YC6258_04816
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Entry
YC6258_04816 CDS
T03690
Name
(GenBank) superfamily II DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gsn
Gynuella sunshinyii
Pathway
gsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YC6258_04816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsn03019
]
YC6258_04816
03400 DNA repair and recombination proteins [BR:
gsn03400
]
YC6258_04816
Enzymes [BR:
gsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YC6258_04816
Messenger RNA biogenesis [BR:
gsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YC6258_04816
DNA repair and recombination proteins [BR:
gsn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YC6258_04816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AJQ96848
UniProt:
A0A0C5VU70
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All DBs
Position
5162323..5164128
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AA seq
601 aa
AA seq
DB search
MLQQALYLLEHTYGYSAFRGQQQHIIESALAGEDVLVLMPTGGGKSLCYQIPALIRPGLG
IIVSPLIALMQDQVSTLTQLGIKAAFLNSTLSADERRTVAYDLRQGNIDLLYIAPERLLQ
PGTLQWLQQFQISLIAIDEAHCVSQWGHDFRADYLQLNQLREAFPGVPRIALTATATPRT
QEEIVQRLELNAPKQFVSSFDRPNIRYSVQAKQDGRKQLIKFLATQRGNSGIIYCLSRKK
VEATSEWLQSRGLNALPYHAGLPTELRAHHLTRFLREEEIIMVATIAFGMGIDKPDVRFV
AHLDLPKSMEAYYQETGRAGRDGEPAEAWMVYGLNDVMHLSQMVDRSEAHEIFKRNEKAK
LEALLGWCEETSCRRRSLLAYFGEQHETDCGNCDTCLTPPKTWDATEPARKLLSCIYRTG
QRFGAGHVIDVLRGKMNERMKDLGHNHLSVFNIGAQLSEQKWRSIVRQLLVKGFIHSDAD
QYGAISLMERSRPLLRGEIQLFLREDIDSKPENMRKTKTSRYNEVSDNDRELWQALRACR
KTLADEFGIAPYMVFHDATLMEMMEYRPETADQLLGISGVGESKLEKFGDAFLEVLREHA
E
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgctccaacaggctttatatcttctcgaacacacttatggctattcagcctttcgcggt
caacagcagcatatcatcgaatccgcgctggccggtgaggatgtgctggttctgatgcca
accggtggcggcaaaagcctgtgttatcagatcccggcactgatacgcccaggtctgggc
attatcgtgtcaccgttgatcgccctgatgcaggatcaggtttccacattaacgcaactg
ggcatcaaagcagcattcctgaactcgacgctaagcgcggacgaacgacgcaccgtcgcg
tatgatctgcgccagggaaacatagacctgctctatatcgctccggagcggctgctgcaa
cctggcacattacagtggctgcaacagtttcagatctctctgattgccattgatgaagcg
cactgtgtcagccaatggggtcatgacttccgggccgattatctgcaattgaatcaattg
cgcgaggctttccccggggtgccaagaatagccctgaccgccactgccaccccccggact
caggaagaaattgttcagcgtcttgagctcaatgccccaaagcagtttgtcagcagtttt
gaccgaccgaacattcgttactcggttcaggccaaacaggacggccgcaagcagctgatc
aaatttctggccacccaacggggcaactcaggcatcatctattgtctgtcgcggaagaaa
gtcgaggcgaccagcgaatggctgcaaagccgtgggttgaatgcactgccgtatcatgcc
ggactgccaaccgagttacgggctcatcatctgacccgttttctgcgcgaagaggagatc
atcatggtggccaccattgcctttgggatgggcatcgataagcccgatgtacgctttgtg
gcgcatctcgatctgcccaaaagtatggaggcttactatcaggaaaccggccgcgccggt
cgtgatggcgaacccgccgaagcctggatggtctacggcctcaatgatgtcatgcacttg
agtcagatggtggaccgcagcgaagctcatgaaatcttcaaacgcaatgaaaaagccaaa
cttgaagccttgctgggatggtgcgaggaaaccagttgccggcgtcgctctctgctggcc
tattttggtgaacaacacgagaccgactgcggcaattgcgatacctgtctgacacccccc
aaaacctgggatgccactgaaccggcgcgcaagctgttatcgtgtatctatcgcaccggc
cagcgcttcggtgccggacacgttatcgatgtgctgcggggaaaaatgaatgaacgcatg
aaggatctcggccataaccacttaagtgtatttaacattggtgcacaactcagtgagcaa
aaatggcgctctattgtccgacagctactggtcaaaggatttattcattccgacgcggat
caatacggtgccatcagtctgatggaaagatcccgcccgttattacggggcgaaatacag
ctgtttttgcgtgaagatattgactccaaacctgaaaatatgcgaaaaaccaaaacctcc
cgctacaacgaagtcagtgacaatgatcgcgaactctggcaggcgttgcgggcctgccgg
aaaaccctggccgacgaattcggcatcgctccgtatatggtcttccacgatgcaacccta
atggaaatgatggaatatcgtcccgaaacagccgaccagttactgggcatttccggtgtg
ggcgaatccaagctggaaaaattcggcgatgcgtttctggaggttttgcgggagcatgct
gaataa
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