Gynuella sunshinyii: YC6258_05570
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Entry
YC6258_05570 CDS
T03690
Name
(GenBank) DNA-directed RNA polymerase, beta subunit/140 kD subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gsn
Gynuella sunshinyii
Pathway
gsn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gsn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YC6258_05570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsn03021
]
YC6258_05570
03400 DNA repair and recombination proteins [BR:
gsn03400
]
YC6258_05570
Enzymes [BR:
gsn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YC6258_05570
Transcription machinery [BR:
gsn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YC6258_05570
DNA repair and recombination proteins [BR:
gsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YC6258_05570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
YtzH
Motif
Other DBs
NCBI-ProteinID:
AJQ97598
UniProt:
A0A0C5VWA1
LinkDB
All DBs
Position
complement(6039450..6043532)
Genome browser
AA seq
1360 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPPVMELPYLLAIQLDSYRSFLQAGLSPDKRVDEGLHAAFKSV
FPIVSYSGNAALEYVSYRLGEPTFDVKECQLRGVTYAAPLRVKVRLIIYDKESPSKAIKD
IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPATILLRALGFTSQEVLEMFFTTTEYRVETEG
FKFDLISDRLKGETAQFEIKDGSGNVIIEEGRRITARHIKLMEKAGISELEVPDAYMLGR
TIARDIVDPKTGEILAPCNTEVTPDLITSVRASGLKQIQVLYTNDLDCGPFVSETLRIDP
TNTQLEALVEIYRMMRPGEPPTKESAENLFQNLFFSEERYDLSAVGRMKFNRRLGRNEEK
GSGVLDSHDIIDVLKTLIDIRNGNGRVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
RERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRDRAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSTYARTNSYGFLETPYRKVV
EGKATNEIAYLSAIDEAAHTIAQANVPLDAEGNIQGELVQVRHQGEFTLAPIEKVDFMDV
SPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKAEKPLVGTGIELAVARDSGVC
VVAQRGGVVESVDASRIVVRVDNEEVVAGEAGVDIYNLTKYTRSNQNTCINQKTLVSTGD
KISRGDIMADGPSTDMGELALGQNMRIAFMPWNGYNFEDSILLSERVVQDDRFTTVHIQE
MTCIARDTKLGPEEITADIPNVGESALAKLDESGVVYIGADVGPGDILVGKVTPKSETQL
TPEEKLLRAIFGEKASDVKDTSLRVKGGTRGTVIDVQIFTRDGVEKDQRAKDIERMQLEA
FRKDLNTEFKIIEQATFERLASALVGQAAAGGPNLTKGDVITAEYLQTLPHEQWFKLRMQ
EESLVDLLEKAEEGLEETRKDHEKRFDDKKKKLQSGDDLAPGVLKIVKVYVAVKRKIQPG
DKMAGRHGNKGVVSVIMPVEDMPYDENGEPVDVVLNPLGVPSRMNVGQVLETHMGLAAKG
IGRKINEMVEQQRAVADLREFLNKIYNQTGQGYRHESIDEMTDAEIIDLANNLKGGLPVA
TPVFDGAKEAEIKELLRLAGYSDSGQMQLWDGRTGEAFDRQTTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK
MYKNIVDGNHKMEPGMPEAFNVLVKEVRSLGIDMELENDE
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcctacacagagaaaaagcgtatccgtaaggatttcggtaaattgcctccg
gtcatggagctgccttatttgctggccattcaattggacagctatcgtagttttttacaa
gccggactgtctccagataagcgtgttgatgaaggtttgcacgcagcatttaagtcggta
tttcctattgttagttattccggaaatgctgcgttggagtatgtaagttatcgattggga
gaacccacttttgatgtcaaggaatgtcaattgcggggagtaacgtatgcagcaccactg
cgtgtgaaggtgcggctaataatttacgataaagagtcgccatccaaagctattaaagac
atcaaggaacaagaagtttacatgggcgaaattccgctcatgacagacaacggtactttt
gtcattaatggtactgaacgggttattgtttctcagttacatcgatctccgggcgtgttt
tttgatcacgataaaggtaagacccattcttccggaaaactgttgttttcagcaagggta
attccttatcgtggttcgtggttggattttgaatttgacccgaaagataatgtgttcgtg
cgtatcgatcgcagaagaaagttaccagctactattttattgcgcgctcttggctttaca
agtcaggaggtgctggaaatgtttttcactacgaccgaatatcgtgttgagacagaaggc
tttaaatttgatttgatctctgacaggctcaaaggtgaaactgcgcagtttgaaatcaaa
gatggttcaggtaatgtaattatcgaagaagggcgacggattaccgcgcgtcacatcaag
ctgatggaaaaagccggaattagcgagctcgaagtgccagatgcatatatgcttggccgt
acgatagcccgtgatattgttgacccaaaaaccggcgaaatactggctccttgtaatacc
gaagttactcccgacctgattacgtcggtcagagcttccggcctgaaacaaattcaggtt
ctttatactaatgaccttgattgtggaccgtttgtctcagagactcttagaatcgatccg
accaatactcaactggaagcattggttgaaatctatcgaatgatgcgtcctggtgagcca
ccaacaaaagaatctgctgaaaacctgtttcaaaacctgtttttctccgaagagcgttat
gatctttctgcagttgggcggatgaaattcaatcgccggcttggtagaaatgaagaaaaa
ggtagtggcgtgctggacagtcacgacattatcgatgtgttaaagacactgattgatatt
cgtaacgggaatggccgagtcgacgacatcgatcacttgggtaaccgtcgtattcgctct
gttggtgaaatggctgagaaccagtttcgggttggactggttcgtgtggagcgagctgta
cgtgaacgattgtcaatggcagaaagcgaaggtctgatgcctcaggatctcattaatgcc
aagccagtcgccgcagcagttaaagagttttttggttcatcgcagctgtctcagtttatg
gatcagaataatccgctttctgaagttactcataagcgtcgtgtgtcagccctaggtccc
ggtggtcttacccgagatcgtgctggtttcgaggtccgtgacgtacatccaactcactat
ggtcgggtatgtcctattgaaacccctgaaggtccaaacatcgggctgattaactcgttg
tctacctatgccagaaccaacagctacggtttccttgaaaccccttatcgtaaggttgta
gaaggcaaagcaactaacgagattgcctatttgtccgctattgatgaagctgcgcacact
attgctcaggccaacgtaccgttggatgcggaaggtaacattcagggtgagcttgttcag
gtgcgtcaccagggcgaatttacactggcgccgatcgaaaaagtagatttcatggatgtt
tctccccgccaggttgtgtcggtcgcagcatctctgattcctttcctggagcatgatgac
gcgaaccgggctttgatgggatcaaacatgcaacggcaggcggttcctacattgaaagcg
gaaaagccgctggtcggaaccggtatagagctggccgtggcccgtgattctggtgtttgt
gtggtagcacaacgtggtggtgttgttgaatctgttgatgctagccgtattgtggtacgt
gttgataatgaagaagttgtggcaggtgaagcaggtgttgatatttacaatctcaccaag
tacacccgttctaaccagaatacctgtattaaccagaagactcttgtgagcactggggac
aaaatcagtcgtggtgacatcatggcagatggtccgtcaacagatatgggggaactggcc
ctgggtcagaatatgcgtatcgcatttatgccctggaacggctacaacttcgaagactct
attcttttgtccgaacgtgttgtgcaggatgaccgttttacaacggttcatattcaagaa
atgacctgtattgcccgtgataccaagttaggtcctgaggaaattacagcagatattcca
aatgttggtgaatctgcgttagccaaactcgacgaaagcggcgttgtttatatcggtgca
gacgttgggcctggtgatattctggttggtaaagttacgcccaaaagcgaaactcagctg
acaccggaagaaaaactgttacgtgctattttcggtgaaaaggcctctgatgtaaaagat
acctctttgcgtgtaaaagggggaacgcgtggtactgttatcgatgtgcagatttttact
cgcgacggtgtcgaaaaagatcagcgggcaaaagatatcgaaagaatgcaattagaagca
ttccgtaaggatctgaacaccgaatttaagattatcgaacaagcaactttcgagcgtttg
gcgagtgctctcgttggtcaagctgctgcaggtggtccgaacctcacaaaaggtgatgtt
atcactgcggagtatttgcagacgttgcctcatgaacagtggttcaagctgagaatgcag
gaagagtctctagtcgacctgttggaaaaagcagaagagggcttggaagaaacccgcaaa
gatcacgaaaaacgctttgatgataagaagaagaagctgcagtccggagatgatctggca
ccaggggttttgaaaattgtcaaagtttatgtcgctgtgaaacgcaagatccagcctggt
gacaaaatggccggtcggcatggaaacaagggtgtggtctcagtgattatgcctgtcgaa
gatatgccctatgatgaaaacggtgagcctgttgatgtggtgctgaaccctctgggtgtg
ccatcgcggatgaacgttggtcaggtgctggaaacacatatggggcttgctgcaaaaggc
attggtcgcaagatcaatgaaatggttgagcagcagcgtgcagtcgcggatttacgtgag
tttctgaataagatctacaatcagactggtcaaggctaccgtcatgaatctattgatgaa
atgacagatgctgagattattgatcttgctaataaccttaagggtggtttgcccgttgcg
acaccagtgtttgatggtgcaaaagaagctgaaatcaaagaattacttcgtttggcgggt
tattcggattctggtcaaatgcagctgtgggatggtcgtaccggtgaggctttcgaccgc
cagacaaccgttggttacatgtacatgctgaaattgaatcacttggttgacgataaaatg
catgcacgttccaccggctcttacagtttggttacccagcagccacttggtggtaaagcc
cagtttggtggccagcgtttcggggagatggaggtctgggctctggaagcatatggagca
gcctacactctacaggaaatgcttactgttaagtcggatgacgtgaatggccggaccaaa
atgtacaaaaatattgtcgatggtaaccacaagatggagccaggtatgccggaagccttt
aacgtattggtgaaagaggttcgttctcttggcatcgatatggaactggaaaacgatgaa
tag
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