Geobacillus subterraneus: GS3922_15465
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Entry
GS3922_15465 CDS
T04323
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gsr
Geobacillus subterraneus
Pathway
gsr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GS3922_15465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsr03400
]
GS3922_15465
Enzymes [BR:
gsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GS3922_15465
DNA repair and recombination proteins [BR:
gsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GS3922_15465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMX84900
UniProt:
A0A143MLM7
LinkDB
All DBs
Position
complement(3167613..3171146)
Genome browser
AA seq
1177 aa
AA seq
DB search
MLSLHRYLAENQDVRTIIEGIHARLKEQLVAGLSGSARSVFISTLYKETGRPMLVVAHNL
FQAQKIHDDLVSLLGPDDVFLYSVNEVIAAEMAIASPEMKAQRLEIMNHWAQGGKGIVVC
PAAGLRRLLPPLSLWKRYLFTFSVGQELNLERDKQLFVEMGYKRVATVSAPGEFSIRGGI
VDIYPLTAELPYRIELFDTEIESIRTFTPDDQRSHEQVERVMIGPADEIILDEEARRRGI
ERIEAGLAASLEKMKDDAAKQRMYEHIHAELEQLREGQEIEQQYKYMSLFYEKAASLLDY
MPEDGVLLMDEMSRLQETAERLDREEAEWYTSLLDSEKMIHDVPISHSFSELLQKHRFQR
VYLSLFLRHAPHTHPQNVVNITCKQMQNFHGQIALLQSEMERWKKANYAVVFLAPDDERV
KKLQSLLEDYEIDALPLPREAALLHGKCQLLQGDLNTGFELPLQKLAVITEEELFKKRAK
RPARRQKLSNAERIKSYAELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD
TLYVPVDQMDQVQKYVGSEGKEPKIYKLGGTEWKKVKKKVESSVQDIAEDLIKLYAEREA
SKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESEKPMDRLLCGDVGYGKTEV
ALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPINVGLLNRFRTKKQQAETIK
GLKDGTIDMVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTAT
PIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDGQVFFLYN
HIEDIDLKAEEIAQLVPEARVTFAHGRMSEAELESTILAFLEGQYDVLVTTTIIETGVDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNETAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRRGLKREEERPD
VVIDVEVDAYIPDAYISDGLQKIEMYKRFKAVETLEDVEALREEMADRFGDYPDEVAYLF
QIAEIKALAKQLGVESIKQHKQQIDLLFTEQASKTVEIQRLSGIGRQHGRLFGFGMDGAK
LKIVLYIKQMKPHEWLMILYETLKQLSGVENEKSIIA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgctttcgctgcatcgctatttagctgaaaaccaagatgttcgcacgatcattgaagga
atccatgcccgcctgaaagaacagcttgtcgccgggctgtccgggtcggctcggtctgtt
tttatctccaccctttataaggagacgggccggccgatgttagttgtggcccataacttg
tttcaggcgcaaaaaatacatgacgatctcgtttcactgcttggaccggacgacgtgttt
ctttattcggtcaacgaagtgatcgccgccgaaatggcgatcgccagtccggagatgaag
gcgcaacgtctcgaaattatgaaccattgggcgcagggcggaaaagggatcgtcgtctgt
ccggcggctggcttgcggcgcttgctgccaccgctgtcgctttggaaacgttacttgttc
acgttctcggttggacaagagctcaatttggaacgcgataaacagctgtttgtcgaaatg
ggatacaagcgggtcgccactgtttccgctcctggggagttcagcatccgcggggggatc
gttgatatttatccgctaacggcggagctgccgtatcggattgagctgtttgatacagaa
attgaatcgattcgaacgttcacccctgatgatcagcgttcgcatgagcaggtggaacgt
gtaatgattgggccagctgacgaaatcattcttgatgaggaggcgcggcgacggggaatc
gagcggatcgaggctgggcttgcggccagcttagaaaaaatgaaagatgacgccgccaag
cagcggatgtacgagcatatccacgctgagctagaacagctgcgcgaggggcaggaaatc
gagcaacagtataaatatatgtctcttttttatgaaaaagctgcgagtttactagattac
atgccggaagacggcgtgctgctgatggatgaaatgagccggttgcaggagacggctgag
cggctggatcgcgaagaggcggaatggtatacaagcttgcttgacagcgaaaaaatgatt
catgatgtaccgatttcgcattcattttctgaattgttgcaaaagcatcgattccaacgg
gtgtacttatccttatttttgcgtcatgcaccgcatacccatccgcaaaatgtcgtcaat
attacatgcaagcaaatgcaaaactttcatggccaaatagcgcttcttcagtctgagatg
gagcggtggaaaaaggcgaactatgcggtcgtctttttggcgccggatgacgagcgggtg
aaaaagctgcagtcgctgcttgaagattacgagatcgatgcgctgccgctgccgcgcgaa
gcggcgctgttgcacggcaaatgccagctccttcaaggcgatttaaacacagggtttgaa
ctgccgctgcaaaaactggccgtcatcactgaggaagaactgttcaaaaagcgggccaaa
cgcccagcgcgtcggcaaaagctatctaacgccgagcggatcaaaagctatgccgaactg
caagtcggcgactatgtcgtccatgtcaaccacggcatcgggaaatatttaggcatcgag
acgttagaaatcaacggagtgcataaggattatattcatatccaataccaaggcggcgat
acgctgtacgtcccggtcgatcaaatggatcaagtgcagaagtacgtcggttcggaagga
aaagagccgaaaatttataagctcggcggtacggaatggaaaaaagtcaaaaagaaagtg
gagtcgtctgtccaagacattgcagaagatttaatcaagctgtacgctgagcgcgaggca
agcaaaggatatgcgttttccccggatacagaaatgcagcgcgaatttgaggcggcgttt
ccatatcaagagacggaagaccagctccgttcaattgaggaaattaagcgcgatatggaa
agcgagaaaccgatggaccgcctcctttgtggcgacgttggctatgggaaaacagaagtg
gcgctgcgggcggcgtttaaagcgattatggacggcaaacaagtcgccttcctcgtgccg
acgacgattttggcccagcaacattacgaaactgtccgcgaacggtttcaagggtttccg
attaacgtcgggctgttaaatcggtttcggacgaaaaaacagcaggcggagacaattaaa
gggttaaaagacggcacgatcgacatggtgatcggcacgcaccggctgttgtccaaagac
gtgaagtttaaagatttaggcttgctcattatcgacgaggaacagcggtttggtgtggcg
cataaagaaaaaattaagcagctgaaggcgaatatcgacgtgctcacactcacggcgacg
ccgatcccacgcacgctccatatgtcgatgatcggggtgcgcgatttgtcgatcatcgag
acaccgccggaaaaccgcttcccggtccagacgtacgttatggaatacacgcctgaactt
gtgaaagaagccattgagcgggagctcgcccgcgatgggcaagtctttttcctttataac
catattgaagatatcgacttgaaagcggaagaaatcgcccagcttgtcccagaagcgcgc
gtgacgtttgcgcacgggcggatgtcggaagctgagctcgaatcgacgattttagccttt
ctggaagggcaatatgacgtgcttgttacaacgacgattattgagacgggcgtcgatatt
ccgaacgtcaatacgctcatcgtatacgacgccgaccggatggggctttcgcagctgtac
cagctgcgcgggcgcgtcggccgttcaaaccgtgtcgcttatgcgtacttcacgtaccgg
aaagacaaggtgctgaacgagacagcggaaaaacggctgcaagctattaaagagttcacc
gagcttggctccgggtttaaaattgccatgcgcgatttgtcgatccgcggcgccggcaat
attctcggcgctgaacagcacggctttatcgattcggtcggatttgatttatactcgcaa
atgctgaaagaggcgattgaaaaacggcgcggcctcaaacgggaagaggagcgcccggat
gttgtcatcgatgtggaagtcgatgcctatattccagatgcgtacatttccgatggattg
caaaagatcgagatgtacaagcggtttaaggcggttgagacgctcgaggatgtcgaggcg
ctgcgcgaggagatggccgaccgcttcggtgattatccggatgaggtggcttatttgttc
caaattgcggaaattaaagcgttggcgaagcagctcggtgtcgaatcgattaagcagcac
aagcagcaaatcgatcttttatttaccgaacaggcgtcgaaaacggtggaaatccagcgc
ctatccggcatcggccgccagcatggccgcctgttcggatttggcatggatggggcgaag
ctgaaaatcgtcctttatattaagcaaatgaaaccgcacgaatggctgatgatcttgtat
gaaacattaaagcagctgtccggggtggaaaacgaaaaatcgattatcgcgtaa
DBGET
integrated database retrieval system
