Geovibrio thiophilus: EP073_00435
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Entry
EP073_00435 CDS
T05803
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gtl
Geovibrio thiophilus
Pathway
gtl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gtl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EP073_00435 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gtl03400
]
EP073_00435 (mfd)
Enzymes [BR:
gtl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EP073_00435 (mfd)
DNA repair and recombination proteins [BR:
gtl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EP073_00435 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
MFD_D3
RecG_dom3_C
AroM
UB2H
Motif
Other DBs
NCBI-ProteinID:
QAR31920
UniProt:
A0A410JUQ7
LinkDB
All DBs
Position
complement(89241..92552)
Genome browser
AA seq
1103 aa
AA seq
DB search
MDFTSITGGLWGAGAAYRLRKNFSGGRVLVIASDRNRFDLLLSELVFFFGADRVAPFPEY
TQEPFEEARVLTDVLSMRISTLHRLTNGFEGVVLVTPGSLAKTLPPADVFGASVISLKKG
GTADREELRYALEYSGYVNVELVSGQGEYTFRGDIAEVFTPQMENPVRIEFFDDEIDRMD
VFESFSRRTEKKLEELTILPAGEALFDEDDLAAVNIPSVSEKAKNFGKFAGCHWFSPFIY
RSMANLFDYLGAGVQVVTLERDLTDAFIELDNTVKDKQDHYGLPAGAEKNFINAETVEKL
LAAREVHLFEESADADSEDGGLAGSAARFTHEKKNLYQSVTDAAAKIKDLLDDRYGVLVC
IESRKLKSLFLDFMRDHEIAVTEISSYYKLPAHGIGLYGEKVSGGFIDPRGKVAVVTDED
IFGTVKRKVKKAKKEVYTTSLSDLEPNDYVVHVDYGIGIYRGLVHKEIGGVAGDFLVLEY
ENGEILYVPLDKIGQIQKYIGAEGRAPRVHSLQTATWKKLKVQASTRAKKLAIDLLKLYA
DRKVRNGFAFMDDGVLLEQFEQGFEYDETDDQLSAIHDVYQGMEDEKPMERLVCGDVGFG
KTEVAMRAACKAAACGKQVGVLVPTTVLARQHYVNFKKRFADMPVNVDYISRYKTSAEIK
KTLRRLAAGEVDIIIGTHRLLSKDVEFRDLGLLIIDEEQRFGVAHKEKITALKSNIDIIY
LSATPIPRTLQLSMSGIRDISVIETPPEERLPVITRVIKTDEEIKNALLKELERGGQVYF
LHNKVEDIESVAESVRKLVPHARLGIAHGQMTADAMESVLYSFYQGELDVLVCTTIVENG
IDIANANTIIINNAAHFGLAQVYQLKGRVGRSRRRGYCYMLVPSMTSLNEIARKRLKIIQ
QLSDLGSGVKIAFYDLQLRGAGDLLGADQSGFMVKIGYELFLRMIEDAVKELKGELNSSR
ETEVASALPYFISAEYVEDVSLRFDYYRRFSKIQSEKEMRGLLDDLAQVYGEMREETENL
GWIMLMKNLAGKVYAEKLAIHTGRVRIIFDKDTPVSPSRLVQVLAEVKAVYKFENENSLV
LYFEKKDNFLEKTCEILSELAEG
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggacttcacttcaataacaggcggtttatggggcgcaggcgccgcgtaccgcctcaga
aaaaatttcagcgggggcagggtgcttgtcattgcctccgacagaaaccgttttgacctt
cttttatccgagctggttttcttcttcggggcggatagggttgcgccttttcccgaatac
acacaggaacctttcgaggaagcaagggttcttaccgatgtcctttccatgcgtatcagc
actttacacagacttacgaacggctttgaaggggttgtgcttgtaactcccggctcactc
gcgaagactcttccgccggctgatgttttcggcgcgtcggtgatcagcctgaaaaaaggc
ggcactgcggacagggaggagctgagatacgctcttgagtattccggctatgtaaacgtt
gagcttgtttccggtcagggggaatacaccttcaggggcgacatagcggaagtctttact
ccgcagatggaaaaccctgtgaggatagagttttttgatgacgagatcgaccgtatggac
gtttttgagtcattcagccgcagaacggagaagaagcttgaggagctcacgattcttccg
gcgggggaagctctttttgatgaggatgatctggcggcggtgaatattccgtcagtgagt
gaaaaggcgaagaacttcggcaagtttgccggatgccactggttcagcccttttatatac
aggagcatggctaacctgtttgattaccttggcgcaggcgtgcaggttgtcactctggag
cgggatctaaccgatgcgttcatagagctggacaacacggttaaggacaaacaggatcat
tacggtcttcctgcgggcgctgagaaaaacttcataaacgcggagacagtggaaaagctt
ctggctgcgcgcgaggtgcacctttttgaggagtcggcggacgcagacagcgaggacggc
gggcttgccggttccgccgcgagattcactcatgagaagaagaacctttaccagtcggtg
acagacgcggcggcgaagataaaggatctgctggacgacagatacggtgttctggtctgt
atcgaaagccgcaagcttaaaagcctgtttctggacttcatgcgggaccatgaaatagcg
gtcacggaaatatcctcatactataaacttcccgcccacggcatagggctctacggcgag
aaggtcagcggcggcttcatagacccgagagggaaggttgctgtcgtgaccgatgaggac
atcttcggaaccgttaaaagaaaggtcaagaaggcaaaaaaggaagtctacaccacaagt
ctcagcgaccttgagccgaatgattacgttgttcacgtggattacggaatcggaatatac
agaggacttgttcacaaagagataggcggtgttgcgggggactttctcgttcttgagtac
gaaaacggggagatactctacgttccgcttgataaaataggacagatccagaaatacata
ggcgcagaaggcagagcgccgagggttcacagcctccagaccgctacttggaaaaagctg
aaggttcaggcaagcacaagggcgaagaagctggctatcgaccttctgaagctgtacgca
gacagaaaagtgagaaacggcttcgctttcatggacgacggcgtgcttcttgagcagttt
gagcaggggttcgagtatgacgaaacggatgatcagctttccgccatacacgatgtttat
cagggcatggaggatgagaagccgatggagcgtctcgtctgcggcgatgtgggcttcggc
aagacagaagtcgccatgcgtgccgcctgcaaggctgccgcctgcggaaagcaggtaggg
gttctggtgccgaccacggttcttgcccgtcagcattacgtaaacttcaagaaacgcttc
gccgatatgcccgtgaatgtcgactatatcagcagatataagacatccgccgaaataaaa
aagaccctccgcaggctggctgcgggtgaggtggatataatcatcggaacgcacaggctt
ctttccaaggatgtggagttcagagatctggggcttctgataatagacgaggagcagcgt
ttcggcgttgcccacaaagagaaaataacagcgctcaagagcaatatagatataatctac
ctgtcagccacgcctattccccgaacattgcagctttccatgtccggcatccgtgacata
agcgtcatagaaacaccgccggaggagaggcttccggttatcacccgtgtaatcaaaacg
gatgaggagatcaaaaacgcccttttgaaagagcttgagaggggcgggcaggtttatttt
ctccataacaaggttgaggacatagaatccgtggcggaatccgtgcggaagcttgtgccc
cacgcaaggcttggaatcgcccacgggcagatgactgcggacgctatggagagcgtgctc
tacagtttttatcagggtgagctggatgttcttgtctgcaccacgattgtcgagaacgga
atagacattgcgaacgcaaatacgattatcataaacaacgccgctcatttcggactggca
caggtttaccagcttaaggggcgtgtcgggcgctcccgcaggcggggctactgttatatg
cttgtacccagcatgacaagccttaatgagatagcccgcaagagactgaagattatccag
cagctttccgatctcggaagcggggtaaagatcgccttctacgatctccagctcagaggt
gcgggggatctcctcggtgctgatcaatcgggcttcatggtgaagatcggctatgagctc
ttcctccggatgatagaggacgctgtcaaggagcttaagggtgaactgaacagctccaga
gagactgaggttgcctccgctctgccgtattttatctccgccgagtatgtggaggatgtt
tcgctgaggttcgattattacaggcgcttttccaaaattcagtcagagaaggagatgcgc
ggacttctggacgaccttgctcaggtttacggcgaaatgcgtgaggagactgaaaatctc
ggctggataatgctgatgaagaatctcgcagggaaggtttatgccgagaaactcgccata
catacggggcgtgtgcgaatcattttcgacaaggacacacccgtttccccgtcaaggctg
gttcaggttcttgccgaagttaaagcggtttataagtttgaaaacgagaacagcttagtg
ctttattttgagaaaaaggacaatttcctagagaaaacatgcgaaattctttctgaactg
gctgagggctga
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