KEGG   Geovibrio thiophilus: EP073_00435
Entry
EP073_00435       CDS       T05803                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
gtl  Geovibrio thiophilus
Pathway
gtl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gtl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    EP073_00435 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gtl03400]
    EP073_00435 (mfd)
Enzymes [BR:gtl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     EP073_00435 (mfd)
DNA repair and recombination proteins [BR:gtl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      EP073_00435 (mfd)
SSDB
Motif
Pfam: DEAD UvrB_inter Helicase_C CarD_TRCF_RID TRCF ResIII MFD_D3 RecG_dom3_C AroM UB2H
Other DBs
NCBI-ProteinID: QAR31920
UniProt: A0A410JUQ7
LinkDB
Position
complement(89241..92552)
AA seq 1103 aa
MDFTSITGGLWGAGAAYRLRKNFSGGRVLVIASDRNRFDLLLSELVFFFGADRVAPFPEY
TQEPFEEARVLTDVLSMRISTLHRLTNGFEGVVLVTPGSLAKTLPPADVFGASVISLKKG
GTADREELRYALEYSGYVNVELVSGQGEYTFRGDIAEVFTPQMENPVRIEFFDDEIDRMD
VFESFSRRTEKKLEELTILPAGEALFDEDDLAAVNIPSVSEKAKNFGKFAGCHWFSPFIY
RSMANLFDYLGAGVQVVTLERDLTDAFIELDNTVKDKQDHYGLPAGAEKNFINAETVEKL
LAAREVHLFEESADADSEDGGLAGSAARFTHEKKNLYQSVTDAAAKIKDLLDDRYGVLVC
IESRKLKSLFLDFMRDHEIAVTEISSYYKLPAHGIGLYGEKVSGGFIDPRGKVAVVTDED
IFGTVKRKVKKAKKEVYTTSLSDLEPNDYVVHVDYGIGIYRGLVHKEIGGVAGDFLVLEY
ENGEILYVPLDKIGQIQKYIGAEGRAPRVHSLQTATWKKLKVQASTRAKKLAIDLLKLYA
DRKVRNGFAFMDDGVLLEQFEQGFEYDETDDQLSAIHDVYQGMEDEKPMERLVCGDVGFG
KTEVAMRAACKAAACGKQVGVLVPTTVLARQHYVNFKKRFADMPVNVDYISRYKTSAEIK
KTLRRLAAGEVDIIIGTHRLLSKDVEFRDLGLLIIDEEQRFGVAHKEKITALKSNIDIIY
LSATPIPRTLQLSMSGIRDISVIETPPEERLPVITRVIKTDEEIKNALLKELERGGQVYF
LHNKVEDIESVAESVRKLVPHARLGIAHGQMTADAMESVLYSFYQGELDVLVCTTIVENG
IDIANANTIIINNAAHFGLAQVYQLKGRVGRSRRRGYCYMLVPSMTSLNEIARKRLKIIQ
QLSDLGSGVKIAFYDLQLRGAGDLLGADQSGFMVKIGYELFLRMIEDAVKELKGELNSSR
ETEVASALPYFISAEYVEDVSLRFDYYRRFSKIQSEKEMRGLLDDLAQVYGEMREETENL
GWIMLMKNLAGKVYAEKLAIHTGRVRIIFDKDTPVSPSRLVQVLAEVKAVYKFENENSLV
LYFEKKDNFLEKTCEILSELAEG
NT seq 3312 nt   +upstreamnt  +downstreamnt
atggacttcacttcaataacaggcggtttatggggcgcaggcgccgcgtaccgcctcaga
aaaaatttcagcgggggcagggtgcttgtcattgcctccgacagaaaccgttttgacctt
cttttatccgagctggttttcttcttcggggcggatagggttgcgccttttcccgaatac
acacaggaacctttcgaggaagcaagggttcttaccgatgtcctttccatgcgtatcagc
actttacacagacttacgaacggctttgaaggggttgtgcttgtaactcccggctcactc
gcgaagactcttccgccggctgatgttttcggcgcgtcggtgatcagcctgaaaaaaggc
ggcactgcggacagggaggagctgagatacgctcttgagtattccggctatgtaaacgtt
gagcttgtttccggtcagggggaatacaccttcaggggcgacatagcggaagtctttact
ccgcagatggaaaaccctgtgaggatagagttttttgatgacgagatcgaccgtatggac
gtttttgagtcattcagccgcagaacggagaagaagcttgaggagctcacgattcttccg
gcgggggaagctctttttgatgaggatgatctggcggcggtgaatattccgtcagtgagt
gaaaaggcgaagaacttcggcaagtttgccggatgccactggttcagcccttttatatac
aggagcatggctaacctgtttgattaccttggcgcaggcgtgcaggttgtcactctggag
cgggatctaaccgatgcgttcatagagctggacaacacggttaaggacaaacaggatcat
tacggtcttcctgcgggcgctgagaaaaacttcataaacgcggagacagtggaaaagctt
ctggctgcgcgcgaggtgcacctttttgaggagtcggcggacgcagacagcgaggacggc
gggcttgccggttccgccgcgagattcactcatgagaagaagaacctttaccagtcggtg
acagacgcggcggcgaagataaaggatctgctggacgacagatacggtgttctggtctgt
atcgaaagccgcaagcttaaaagcctgtttctggacttcatgcgggaccatgaaatagcg
gtcacggaaatatcctcatactataaacttcccgcccacggcatagggctctacggcgag
aaggtcagcggcggcttcatagacccgagagggaaggttgctgtcgtgaccgatgaggac
atcttcggaaccgttaaaagaaaggtcaagaaggcaaaaaaggaagtctacaccacaagt
ctcagcgaccttgagccgaatgattacgttgttcacgtggattacggaatcggaatatac
agaggacttgttcacaaagagataggcggtgttgcgggggactttctcgttcttgagtac
gaaaacggggagatactctacgttccgcttgataaaataggacagatccagaaatacata
ggcgcagaaggcagagcgccgagggttcacagcctccagaccgctacttggaaaaagctg
aaggttcaggcaagcacaagggcgaagaagctggctatcgaccttctgaagctgtacgca
gacagaaaagtgagaaacggcttcgctttcatggacgacggcgtgcttcttgagcagttt
gagcaggggttcgagtatgacgaaacggatgatcagctttccgccatacacgatgtttat
cagggcatggaggatgagaagccgatggagcgtctcgtctgcggcgatgtgggcttcggc
aagacagaagtcgccatgcgtgccgcctgcaaggctgccgcctgcggaaagcaggtaggg
gttctggtgccgaccacggttcttgcccgtcagcattacgtaaacttcaagaaacgcttc
gccgatatgcccgtgaatgtcgactatatcagcagatataagacatccgccgaaataaaa
aagaccctccgcaggctggctgcgggtgaggtggatataatcatcggaacgcacaggctt
ctttccaaggatgtggagttcagagatctggggcttctgataatagacgaggagcagcgt
ttcggcgttgcccacaaagagaaaataacagcgctcaagagcaatatagatataatctac
ctgtcagccacgcctattccccgaacattgcagctttccatgtccggcatccgtgacata
agcgtcatagaaacaccgccggaggagaggcttccggttatcacccgtgtaatcaaaacg
gatgaggagatcaaaaacgcccttttgaaagagcttgagaggggcgggcaggtttatttt
ctccataacaaggttgaggacatagaatccgtggcggaatccgtgcggaagcttgtgccc
cacgcaaggcttggaatcgcccacgggcagatgactgcggacgctatggagagcgtgctc
tacagtttttatcagggtgagctggatgttcttgtctgcaccacgattgtcgagaacgga
atagacattgcgaacgcaaatacgattatcataaacaacgccgctcatttcggactggca
caggtttaccagcttaaggggcgtgtcgggcgctcccgcaggcggggctactgttatatg
cttgtacccagcatgacaagccttaatgagatagcccgcaagagactgaagattatccag
cagctttccgatctcggaagcggggtaaagatcgccttctacgatctccagctcagaggt
gcgggggatctcctcggtgctgatcaatcgggcttcatggtgaagatcggctatgagctc
ttcctccggatgatagaggacgctgtcaaggagcttaagggtgaactgaacagctccaga
gagactgaggttgcctccgctctgccgtattttatctccgccgagtatgtggaggatgtt
tcgctgaggttcgattattacaggcgcttttccaaaattcagtcagagaaggagatgcgc
ggacttctggacgaccttgctcaggtttacggcgaaatgcgtgaggagactgaaaatctc
ggctggataatgctgatgaagaatctcgcagggaaggtttatgccgagaaactcgccata
catacggggcgtgtgcgaatcattttcgacaaggacacacccgtttccccgtcaaggctg
gttcaggttcttgccgaagttaaagcggtttataagtttgaaaacgagaacagcttagtg
ctttattttgagaaaaaggacaatttcctagagaaaacatgcgaaattctttctgaactg
gctgagggctga

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