Geobacillus thermodenitrificans: GTNG_0099
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Entry
GTNG_0099 CDS
T00496
Name
(GenBank) RNA polymerase beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gtn
Geobacillus thermodenitrificans
Pathway
gtn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gtn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GTNG_0099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtn03021
]
GTNG_0099
03400 DNA repair and recombination proteins [BR:
gtn03400
]
GTNG_0099
Enzymes [BR:
gtn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GTNG_0099
Transcription machinery [BR:
gtn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GTNG_0099
DNA repair and recombination proteins [BR:
gtn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GTNG_0099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABO65486
UniProt:
A4IJI2
LinkDB
All DBs
Position
116399..120052
Genome browser
AA seq
1217 aa
AA seq
DB search
MTNKPRSKTDGSKREVYPLLDVNKFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPE
KDGLFCERIFGPTKDWECHCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVS
HIWYFKGIPSRMGLVLDMSPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRAYREKY
GQSFQASMGAEAIKKLLQDIDLDKEVATLKEELKTAQGQRRARIIKRLEVLESFRSSGND
PAWMVLDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQ
NEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRS
VIVVGPNLKMYQCGLPKEMALELFKPFVMKELVERGLAHNIKSAKRKIERVHPEVWDVLE
DVIKEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLS
AEAQAEARLLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTMEREGAIGEGMVFKDTDEA
LLAYHNGYVHLHSRIAIHAGSLKNETFTPEQNNKLLLTTVGKLIFNEILPKSFPYINEPT
TENIEGRTPDKYFLDKGVDVREEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSKMLDR
MKDLGFQYSTKAGITIGVSDIVVLPEKQEILDEAQAKVDTVLKQFRRGLITDEERYERVI
SVWSAAKDKIQDRLMKSLDKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELP
IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDR
GILARALTDGTEVVVKLEERLVGRYAHKTVHHPETGEVIVRKDEMITEDIANEIIKAGIT
EVWIRSVFACNTRHGVCKKCYGRNMATGMDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTG
GVAGDDITQGLPRVQELFEARNPKGQAVISEIDGTVVAINETRDNQYEIVVQSEVETRSY
VAPYNARLKVEEGQHVERGQELTEGSVDPKQLLRVRDITSVQEYLLREVQKVYRMQGVEI
SDKHIEVMVRQMLRKVRVIDAGDTDVLPGTLLDVHQFTDVNAQAIREGKRPATARPVLLG
ITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMARYRN
VKPAVKKETASDTVPSN
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacaagccacggagtaaaaccgacggatcaaagagggaggtataccccttgcta
gatgtcaataagtttgagtacatgaaaatcgggctcgcttccccggagaaaattcgttcc
tggtcgtacggtgaggttaaaaaaccagaaacgatcaactatcggacgttaaagccggaa
aaagacggcctattttgcgagcgcattttcggcccgacgaaagactgggagtgccattgc
ggcaaatataagcgcgtccgctacaaaggggttgtttgtgaccgttgcggcgtcgaagtg
acgcgttccaaagtccgccgtgaacggatgggccatatcgagctcgccgctccggtttcg
cacatttggtattttaaaggcatcccgagccggatgggtcttgtgcttgatatgtcgccg
cgggcgcttgaggaagttatttactttgcttcttacgtcgtcaccgacccaggtgatacg
ccgctggagaaaaaacagctgttgtcggaaaaagaataccgcgcctatcgcgagaaatat
ggtcaatcgttccaagcatcaatgggggctgaggcgattaaaaagctgctccaagacatt
gacttggataaagaagtggccacactgaaagaagagctgaaaacagcgcaagggcaacgg
cgcgcccgcattattaaacgacttgaggtgcttgagtcattccgcagctccgggaatgat
ccagcttggatggtgcttgatgtgctgccggtcattccgccggaactccgcccgatggtt
cagctcgatggcggacggtttgcgacatcggacttaaacgatttataccgccgtgtcatc
aaccgcaacaaccggttgaaacggttgcttgaccttggcgcaccgaacatcatcgtgcaa
aacgagaagcggatgttgcaagaggcagtcgatgctttgatcgacaacggccgccgcggc
cgcccagtaactgggccggggaaccgcccgttaaagtcgctttcccatatgctgaaagga
aagcaagggcgcttccggcaaaacttgctcggtaaacgggtcgactactctggtcgttcg
gttattgtagtcggtccaaacttaaaaatgtatcaatgcggactgccgaaagaaatggcg
ctcgagctgtttaagccgttcgtcatgaaagaactcgttgagcggggcttggcgcacaac
attaaaagcgcgaagcggaaaattgagcgcgtgcatccggaagtatgggatgtgcttgaa
gatgtcattaaagaacatccggtgctgttaaaccgtgctccgacgcttcaccgcctcggt
attcaggcgtttgagccgacgcttgtcgaggggcgtgcgatccgtcttcatccgctcgtt
tgtacggcgtacaacgcggactttgacggcgaccaaatggcggtgcacgtgccgctgtcc
gctgaagcacaagctgaagcgcgtttgttgatgctggcggcgcaaaacattttgaacccg
aaagatggaaaaccggtcgttacgccttcgcaggacatggttttaggaaactattacttg
acgatggaacgcgaaggggcaatcggcgagggcatggtattcaaggatacggacgaagcg
ctgcttgcttatcataacggctatgtccatctccattcacgcatcgctatccatgccggc
tcgctgaaaaacgaaacgtttactccggaacaaaacaacaagctgttgctgacgacggtt
ggaaaactcattttcaatgaaattttgccgaagtcgttcccgtacattaacgagccgacg
acggaaaatatcgaagggcggacgccggataagtacttcttggataaaggggtcgacgtg
cgcgaagagatccgcaagcgcgaactcgtgccgccgtttaagaaaaaagtgcttgggcaa
attatcgccgaagtatttaagcggttcaaaattaccgaaacatcaaagatgctcgaccgc
atgaaagatctcggtttccaatactcaacgaaagccggtattacgattggtgtttccgat
atcgtcgttctgccggaaaaacaagaaattttggatgaagctcaagcgaaagtcgacacc
gtgttgaaacagttccgccgcggattgattaccgacgaagaacggtatgagcgcgtcatc
tctgtttggagtgcggcgaaagataaaattcaagatcggttgatgaaatcgctcgataag
cgcaacccgatctttatgatgagcgattccggggcgcgcggtaacgcctcgaactttacg
cagctcgcagggatgcgcggtttaatggctaacccggccggccggattatcgagctgccg
atcaaatcgtcgttccgtgaaggcttaacggtattggagtactttatctcgacgcacggc
gcgcgcaaagggttggcggatacggcgttgaaaacggccgactcaggttatctcacgaga
cgtcttgttgacgtggcgcaagatgtcatcgtccgtgaagaagattgcggcacggatcgc
ggcattttggcgcgggcgttaacggacggcacggaagttgtcgtcaagcttgaagagcgt
cttgtcggccgctatgcgcacaagacggtgcaccatccggaaacgggtgaagtgatcgtc
cgcaaagatgagatgatcacagaagatatcgccaatgagatcatcaaggctggcattacc
gaagtatggattcgttctgtctttgcttgcaacacgcgccatggtgtgtgcaaaaaatgt
tacggccgcaacatggcgacaggtatggatgttgaagttggcgaggcggtcggcatcatc
gctgcccaatcaatcggtgagccgggtacgcagttgacgatgcggacgttccatacgggc
ggtgttgctggggacgatatcactcaaggtttgcctcgggtacaagagctgtttgaagca
cgcaacccgaaagggcaagccgtcatctcggaaattgacggcacggtcgttgcgattaat
gaaacgcgcgacaatcaatatgaaatcgtcgtgcaaagcgaagtggagacacgctcttat
gtggctccgtacaatgcacgcctgaaagtcgaagaagggcaacacgttgaacgcggccaa
gagctgacggaaggttcggtcgacccgaaacagttgttgcgcgtgcgtgatattacgtct
gtccaagaatacttgctccgtgaagtgcaaaaagtgtaccggatgcaaggggttgaaatt
agcgataagcacattgaagtcatggtgcgacaaatgctgcgcaaagtgcgcgttatcgat
gccggcgatacagatgtgttgccaggcacgcttttggacgttcatcagttcacggatgtc
aacgctcaagctattcgggaaggaaagcggccagcaacagcccgcccggtgctgctcggt
attacgaaagcgtcgcttgaaacggattcgttcttgtcggccgcttcgttccaagaaacg
acgcgcgtcttgaccgatgcagcgatcaaaggaaaacgggatgagctgctcggcttgaaa
gaaaacgtcattatcggcaaacttgtcccggcgggaacaggcatggcccgctaccgcaac
gtaaaacctgccgtcaagaaggaaacggctagtgataccgttccatctaattaa
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integrated database retrieval system
