Gloeophyllum trabeum: GLOTRDRAFT_35919
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Entry
GLOTRDRAFT_35919 CDS
T03130
Name
(RefSeq) hypothetical protein
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLOTRDRAFT_35919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtr03019
]
GLOTRDRAFT_35919
Enzymes [BR:
gtr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
GLOTRDRAFT_35919
Messenger RNA biogenesis [BR:
gtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GLOTRDRAFT_35919
mRNA degradation factors
3'-5' decay
Pan complex
GLOTRDRAFT_35919
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
RNase_T
PAN2_N
UCH
WD40
Motif
Other DBs
NCBI-GeneID:
19305669
NCBI-ProteinID:
XP_007862870
JGI:
Glotr1_1_35919
UniProt:
S7RYU2
LinkDB
All DBs
Position
Unknown
AA seq
1093 aa
AA seq
DB search
MASTYRPIAPLTQPWNLYPEPVTALAFDPVSDTLWTGLHSGNVLAYYTPRGVRGVTYPVG
GGLGVKKVIAEDQYVRAVGVTGDGMGSWNKGGVNKWYFRPSATVMTFSNTSSTSQVIAIS
TTTSELLLLNALTGDPVRQVPAPSMISHLEFSHTCILSGSMDGCIRTHDPRTGMQRHEGG
AESTVKAHSGNIQGLQVSGNFVYTAGWGQRQGRPFPDPLVKIYDLRTLRALPPIPFSDGP
AYINVHPKRPSSIVITSNQGLINIVDISNPNKANEFYQLDAPSFITCAAVSPTGSYMAFG
DGDGVIHLMSAGEHDGEIPFNGFEGQPVEWADTPEPLPDIVWTDSTPLNSIGLPYYNSML
LSAWSPQFMTTKAHFPPPAKIPPQVLSTMKMSDNVAYAPLPKELKGRRNVVVVAPRKDQA
RFRSGKMRRQEVRSEPETPTFETLPEEVPRTYRKVEIEYSKFGVEDFDFGFFNKTEYSGL
ETHILNSYTNSMVQLMHYTLPIRRLAKSHITTNCPREHCLLCELGFVNRMLEDARGINCQ
ASNFCKTLGMLAQAQNAIELIDYGRDAPDTNYAHTIQSFHRFLIDHISSEGNAFPHNPSL
VPSAFAGSASSPAAAPITQLLGIDGKNIITCMNCKAVREKENMTHMVDMIYPRKLYPEDS
TTQHDFVSILRNSLIRQMTHKATCQTCKQFATFETKRSIPTRDLPAILAVNAFVNNEESF
KFWLDNRRHRFLSPMMEVHGQIEGVDDPEGVMYELRAMVVQVVPKTGSSHLVAIVKVPDA
PSTPDRSPWFVFNDFMVRNVSEAEALSFPGKWKVPAVVYLERVDLRDKLDFSALPDQLDE
TILCTDTNISLRVTVNRDKSLIKHECLRYDELPKPGTLVAIDAEFVSMQQEEVEYRSDGT
KKVLRPARLSLARVSVLRGNDGPKQGVPFIDDHIHTSETIVDYLTEFSGIKFGDLDPALS
RYTLTPLKLVYKKLRLLVDRGCIFIGHGLTKDFRIINIFVPPEQVIDTVDLYFIKERQRR
LSLKFLAWFVLQENIQTETHDSIEDARTALRLYKAYHRFEEEGTFDQKLEELYREGKKHV
RRVAVILAARTLD
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccacctacaggcccatagcgccccttacccagccatggaatctctatcccgag
cccgtaaccgctctcgcgttcgatcctgtctcggacaccctctggaccggcctgcattcc
ggcaatgtgctcgcgtactacaccccgaggggtgtgcgcggcgtcacgtaccccgtcggc
ggcggcctcggagtgaagaaagtcatagctgaagatcagtacgtacgagcggtaggtgtc
actggcgatggcatggggtcgtggaataagggaggagtcaataagtggtacttccggcct
tctgcgactgtcatgacattctctaacacttcgagcacctcgcaagtcattgctatatct
accacgacgtcagaactcctcttgctcaacgccctgacgggggaccctgtccgccaagtc
ccagcaccctctatgatctcccacctcgaattctcgcacacatgcattctgtccggctcc
atggacggctgcatccggacgcacgacccccgcacggggatgcagcggcatgaaggcggc
gcggagagcaccgtaaaggcgcacagcggcaacatccagggcctgcaggtcagcgggaac
ttcgtgtatacggcggggtggggccagagacagggccggccgttccccgacccgctggtt
aaaatatatgatctgcgaacgctacgcgcgctccccccgatcccgttctcggatggtccg
gcgtatatcaacgtacatccaaagcgtccatccagtattgtgatcacgtccaaccaaggc
cttatcaacatcgtggacatctcgaatccgaacaaggcgaatgagttctaccagttggat
gcacccagcttcatcacgtgtgccgctgtttcgcccactgggtcttacatggcattcggc
gatggggatggagtcatccacctcatgagcgcaggtgagcatgacggggaaattccgttc
aacgggttcgaaggccagccggtggagtgggcggacactcccgagcccttaccagatatc
gtatggaccgactcgacacccttaaactcgattggtctcccatactacaactccatgctc
ctctccgcttggtcgccacagttcatgacgaccaaggcgcacttcccgcccccggccaag
atcccgccacaagtcctcagcacgatgaagatgagcgacaacgtcgcgtatgcgccgttg
ccgaaagagctgaagggcaggcggaacgttgtcgtcgttgcccctcggaaggaccaggcg
aggtttaggagcgggaagatgcgccggcaggaagtaagatcagagccggagacgcctacg
ttcgagacgctccctgaggaggtccccaggacgtatcgtaaagttgagatcgagtactcc
aagttcggagtggaggatttcgatttcggcttctttaataagactgagtacagcggtctg
gagacacacatcctgaactcgtacacgaactcgatggtgcagctcatgcactacaccctg
ccgatccgccggctagcaaagtcgcatatcacgacgaactgccccagggagcattgttta
ttgtgcgagctgggctttgttaaccgcatgctcgaggacgcgcgcgggatcaattgccag
gcgagcaatttctgcaagacgcttgggatgttagcgcaagcccaaaacgccatcgaactc
attgattacgggcgtgatgcgcccgacacgaactacgcgcacactatccagtccttccac
cgcttcctcatcgatcacatcagctccgagggtaacgccttcccgcacaacccgtcgctc
gtcccgtcagcatttgcgggctccgcgtcgtcccctgctgcggcgcccattacacaactt
ctgggcatagatgggaagaacattataacatgtatgaattgtaaagctgtgagggagaag
gagaatatgacgcatatggtggatatgatataccctcgcaagctatacccagaagactca
accacccaacatgacttcgtgtcgatcctgcggaactcgctgatccgccagatgacgcac
aaagcgacgtgccagacatgcaagcagtttgcgaccttcgagaccaagcggtcgatcccg
acccgcgacctcccggcgattctagctgtcaatgcattcgtgaacaatgaagagagcttt
aagttctggctggacaatcgcaggcaccgattcttgagtccgatgatggaggtgcatggc
cagatcgaaggagtcgacgatcctgagggagtgatgtacgagcttagggccatggtggtt
caagttgttcctaagacagggagctcgcacctggttgcgatagtgaaggtcccggatgct
cctagcactcctgatcgtagtccatggttcgtcttcaacgacttcatggtccgcaatgta
tcggaagccgaagcattgagcttccctggcaaatggaaggttccagctgtggtatatctg
gagcgtgtggatctacgggacaaactggatttcagcgcgctgccggaccagcttgacgag
acgatcctgtgcactgacaccaatatttcattgcgagtaacagtaaaccgtgacaaatcc
ctgattaagcatgagtgtttacggtatgatgaactgcctaagccagggaccctggtggct
atcgacgcggaattcgtatccatgcagcaggaagaagtagaatatcgctccgacgggacc
aagaaggtgcttcgccctgcccgtcttagtcttgcccgagtatcggtgttgcgcggaaac
gacggccctaagcaaggcgtcccgtttatcgatgatcacatccataccagtgagacgatc
gttgactacctgactgaattctctggcatcaagttcggagatctggatccagccctgtcc
cgttatactctgactcctctgaagttggtctacaagaagctcagacttctggtcgacaga
ggatgcatattcataggacatgggcttacaaaagacttccgcataatcaatatcttcgtt
cctcccgagcaggtgatagatacggtcgacctgtatttcatcaaagaaagacagcggcgt
ctttcgctcaaattcctggcctggtttgtgctgcaggagaacatccagacggagactcac
gactcgatcgaggacgcacggacggcgctgaggttgtacaaggcataccatcgcttcgaa
gaggaggggacgttcgatcagaagctcgaggaactctatagggagggaaagaaacatgtg
agacgcgtcgcggtcattctggcagcgcgtactctcgactga
DBGET
integrated database retrieval system
