Gloeophyllum trabeum: GLOTRDRAFT_39839
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Entry
GLOTRDRAFT_39839 CDS
T03130
Name
(RefSeq) DNA ligase/mRNA capping enzyme
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GLOTRDRAFT_39839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gtr03400
]
GLOTRDRAFT_39839
Enzymes [BR:
gtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GLOTRDRAFT_39839
DNA repair and recombination proteins [BR:
gtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
GLOTRDRAFT_39839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
19305941
NCBI-ProteinID:
XP_007864801
JGI:
Glotr1_1_39839
UniProt:
S7Q8P7
LinkDB
All DBs
Position
Unknown
AA seq
754 aa
AA seq
DB search
HPVSDIFRRWAAQLTNDPRSLPAETTSVIFLLLFPEEDVCRKYDLQETKLAQYLLKIFPS
TSTDIKRRLTNWNVQSSNGCLGNVVKDVLESISYASIHLGLPPLSVLEFATLLDKLAATS
AFSDRSIRSKHDRKHRGTRLEILSSIYRRLDPTAAAFVTQIILKDLRPLLYPLQATHYTA
ALTEYNSNAITPLSKEDAMRIWDPTGAMLRAYRCTNSFEDASRAFHSCTPYTTGTPQIGT
PIQIPKCRKGQGCAHALQVFQPSDRVWAETKYDGERAQIHVQIRDGKPWISIFSKSKRDS
TLDRAAIHPIIHRVLGIEEAGNVRLSSPKIRRNIVLEAEMVAYSEEMDKIDEFWRIRDLI
ESTAVGVRGRPRTDAPLSDSQTSSTSDNSTRHLALIFFDVLILESVSLLSAPYATRRDIL
ESLITPIPGYAMLAERTLVSPDGIAEGGDAEERLRSTFARLLSEREEGIVLKAERGLYNE
YRSPWVKLKKDYIPGYGDAVDLVLLAARWDKDRGRELRVSPGTYTTFYLGALTNAAACQS
KASTKPDFRVLFTVSYGLTREQLEHLNFRIRSAVSVEYREHTADQLSYTFVMPKGIPAPE
VILEEPLVAEVFGAGFTKEHSNKYYELRFPRMTKVYRRQERSWEDATDLHSYQKIAFEAV
GKDRPNKDVDDWCKSLWGQPVSPAASCPLKRKRTEEIWKAKLAASDQRTRSRKKLRSDAD
DETLRQVDWTVSSTKRSRPGLKPLASVTNLNQRP
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
catcccgtttcagacatctttcgtcgatgggccgcccaattgacgaacgatcctcggtcg
ctaccggctgaaacgacgagcgtgattttcctgcttctcttcccagaggaggacgtgtgc
aggaagtatgatctgcaagagaccaagctcgcgcagtacctcctcaagatattcccatca
acatccaccgacatcaaacgacgtctgaccaattggaatgtgcagtctagtaatgggtgt
ctaggtaatgtcgtgaaagatgtcctagagtctatttcatacgctagtatccaccttgga
cttcctcctctcagtgtgcttgaatttgccaccctgcttgacaaactagctgccacatcc
gccttctccgaccgttcaatccgaagcaaacatgatcgcaagcaccgcggtacaaggctg
gaaatattatcttccatatatcgacgtctcgaccccacagccgcggcatttgtaacacaa
attatcttgaaggatctccgcccactcttatacccccttcaagcaacgcactataccgcc
gcattgacggagtacaacagcaacgctataacgcccctctccaaggaagacgcaatgagg
atctgggatcctaccggcgccatgttgagagcatatcgatgtaccaactccttcgaagac
gccagtagagcctttcattcttgcaccccatatacgacgggcacgccacaaattggcacg
ccgatccagatcccgaaatgccgtaaaggacagggctgtgctcacgctctgcaggttttc
cagccgtccgaccgtgtatgggctgagacgaagtacgacggcgagcgcgctcagatccac
gtccaaatccgcgatggaaaaccctggatatcgattttcagcaagagcaagcgggattct
acgttggaccgtgcagccatccaccccatcatccaccgcgtccttggtatcgaagaggcg
ggaaatgtgaggctgtcgtcgcccaagatccggaggaacatcgtcctcgaagcagagatg
gttgcgtattcggaagaaatggacaagatcgacgaattctggagaattcgcgacttgatt
gagagtacggctgtgggtgtccgcggtcggccacgcactgatgcgccgctcagtgactcg
caaacttcctccacttcagataattcaacgcgtcacttagctctgatattcttcgacgtt
ctcatcctggaatccgtgtctctcctctccgcgccctatgctactcggcgggacattctg
gaatctctgatcactcccattcccggttatgcgatgcttgctgagcggacgctggtctca
ccggacgggatcgcggagggtggggatgcggaggagaggctcaggagcacatttgcacga
ctactatccgaacgtgaggaaggaatcgtcctcaaagcggagaggggactctacaacgag
tatcgctccccgtgggttaagctcaagaaggactacattcctgggtacggcgacgctgtt
gacctcgtgctgttagccgctcggtgggacaaggatcgaggccgggagctccgagtgtct
cctggaacctatacgacgttttacttgggcgcgctcaccaacgccgctgcgtgtcaatct
aaagcctccacaaaacctgacttccgggtgctattcacagtgtcgtacggtttgacacgc
gaacaactggaacacctcaacttcaggatacggagcgcggtgtcagtcgaataccgagag
catactgcagatcaactttcatacaccttcgtgatgcccaaaggcatccctgcaccagag
gttatcctcgaagagccattggtggccgaggtcttcggggccggcttcaccaaggagcac
tcgaacaagtattatgaactccgatttccccggatgaccaaagtataccgacgtcaggaa
aggagttgggaagacgcgaccgacctgcattcctaccaaaagatcgcattcgaggctgtc
ggcaaagacagaccgaataaagacgtggatgattggtgcaagagtctgtgggggcagcca
gtgtcgcctgccgcttcgtgcccgctgaagaggaagcgtacggaggagatatggaaggcg
aagttagctgcgtcggaccagaggactagaagcaggaagaaactacgctctgacgcggat
gatgagactctgcgtcaagtcgactggacggtgtcgtccacgaagcgctcgaggccaggt
ctgaaaccgctagcgtccgtcacgaacttgaaccagaggccataa
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