Geotalea uraniireducens: Gura_1393
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Entry
Gura_1393 CDS
T00521
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gur
Geotalea uraniireducens
Brite
KEGG Orthology (KO) [BR:
gur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gur03016
]
Gura_1393
Enzymes [BR:
gur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Gura_1393
Transfer RNA biogenesis [BR:
gur03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Gura_1393
Prokaryotic type
tRNA splicing ligases
Gura_1393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABQ25594
UniProt:
A5GA03
LinkDB
All DBs
Position
complement(1634671..1636128)
Genome browser
AA seq
485 aa
AA seq
DB search
MTIPSAIKKISDTVWELPTSYKAGMLVPARIIATEKLIGTMDAGVFDQVTNVACLPGIIN
YAYCMPDGHWGYGFPIGGVAAMDPETGVISPGGIGFDINCGMRLVLTNLTYDEVKPHLRE
LVDALFYRIPTGVGCTGFVRCSQDEFRNVVEQGSRWCLKHGYAWPEDLEMTEEGGCFPGA
DASKVSHKAIERGYDQVGTLGSGNHYCEIQVARPENIYDEETARAFGFTIPNQVAIMFHC
GSRGFGHQVATDYLQIFLGVMERKYGIKVLDRELSCAPFHSPEGQDYFAAMKCAVNMAFA
NRQVILHRIREVFSAVFHKDPEELGMRMVYDVAHNTAKLEKHTVAGKKREVLIHRKGSTR
AFGPGMEGIPDCYRETGQPVIIGGSMETGSYLLAGMKSGAETFFSTAHGSGRTMSRHQAK
KMIRGQKLQRDMEERGIYVRTDSWGGLAEEAGAAYKDIDDVVAATELAGLSKRVVRLVPV
GNIKG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgacgataccatctgccataaaaaagatatccgacacggtctgggaactgcccacctcc
tataaagcagggatgctggtgccggcgcggattatagcgacggaaaaactcattggcacc
atggatgcgggtgttttcgaccaggtaaccaacgtcgcctgtctaccaggcatcatcaac
tacgcctactgcatgccggacgggcactggggatacggtttccccatcggcggcgtcgcg
gccatggacccggaaaccggggtaatctctcccggcggcatcggcttcgacatcaactgc
ggcatgcggctcgtgctcaccaacctcacctacgatgaagtaaaacctcacctgcgcgaa
ctggttgacgccctcttctaccggattcccaccggtgttggctgcaccggtttcgtcaga
tgctcgcaggacgagttcaggaacgtcgtcgaacagggctcgcgctggtgcctgaaacac
ggctatgcctggcccgaagacctggagatgaccgaggaagggggctgttttccgggggcc
gacgcctcgaaggtcagccacaaggcgatcgaacggggatacgaccaggttggaaccctc
ggctccggcaaccattactgcgagatccaggtggccaggccggaaaacatctacgacgag
gaaacggcccgcgccttcggcttcaccatcccgaaccaggtggcgatcatgttccactgc
ggcagccgcggcttcggtcaccaggtggcaaccgactacctgcagatttttctcggcgtc
atggagaggaagtacggcatcaaggtgcttgatcgggaactttcctgcgccccgttccac
tcacccgagggacaggattacttcgccgccatgaaatgcgccgtcaacatggccttcgcc
aaccgccaggtgatcctccaccggatccgcgaggtcttctccgccgtcttccacaaggac
cctgaagagctggggatgcggatggtctacgacgtggcccacaacaccgccaaactggaa
aaacacaccgttgccggcaagaaacgcgaggtcctcatccaccgcaaagggtcgacgcgg
gccttcggccccggcatggagggcattcccgattgctaccgggaaaccggccagccggtg
attataggcggcagcatggaaacgggttcctatcttctggccggcatgaagagcggcgcc
gagacatttttttccaccgcccacggcagcgggcgtaccatgagccgacaccaggcgaaa
aagatgatcaggggacaaaaactgcaaagggacatggaagaacgcggcatttacgtgcgc
accgactcctgggggggactggccgaggaagcgggcgcagcctacaaggacatcgatgat
gtggtggcagccaccgagctggcgggactgagcaagcgggtcgtgcgtctcgtgccggtc
ggcaacatcaagggataa
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