KEGG   Geobacter uraniireducens: Gura_3452Help
Entry
Gura_3452         CDS       T00521                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
gur  Geobacter uraniireducens
Pathway
gur03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gur00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Gura_3452
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gur03400]
    Gura_3452
Enzymes [BR:gur01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Gura_3452
DNA repair and recombination proteins [BR:gur03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Gura_3452
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ABQ27608
UniProt: A5G740
LinkDB All DBs
Position
complement(4059086..4060690)
Genome map
AA seq 534 aa AA seqDB search
MGLKEYASKRRFEKTPEPKPDVPHEGRRLVFVVHKHAARALHYDLRLELEGVLKSWAVPK
GPSLDPSVKRLAVMVEDHPLDYRDFEGVIPEGNYGAGSVIIWDRGFYRHPSAGDENENEK
LLLDGLRKGDMKFVLEGEKLRGEFALVRMGKDGKSWLLLKKKDRYASKGEILQENRSVVS
HKTLEEMLEAGGQKSFKQKKINQIRLHEAKESEELHDAPVKPMPHNIKPMLATLAREPFD
HPDWVFEVKWDGYRAIAEMRDGDVALYSRNLLSLQQKFSPIADALRECRFDAVLDGEIVV
VDDRGHPDFQLLQNYQKSGNGHLLYYVFDLLYFQGHDLTGLPLLRRKEILKKILPSAPKI
KYSDHVWKDGVLFFTVVREKGLEGIIAKHAQSAYQMGIRSRQWLKVKTRLTQEGVIAGFT
EPRGGRKCFGTLVLGVFQGDELIYIGHSGGGFGAKDLQEIRAKLEPLIRKECPFKVRPET
NTPATWVKPELVCEISLSGWTEDAVMRHPVFLRLREDKTAREVVRDSGGEGGNL
NT seq 1605 nt NT seq  +upstreamnt  +downstreamnt
atgggcttaaaggaatacgcatccaaacggcgattcgagaaaacacccgaaccgaaaccg
gacgttcctcacgaggggcgccgtctcgtgttcgtcgtgcacaaacacgcggcccgggcc
cttcattatgatctcaggctggagctggaaggggttctgaaaagctgggccgtgccgaag
ggaccctcgctggatccttccgtaaaaaggctggccgttatggttgaagaccatccgctc
gattacagggatttcgagggggttatcccggagggtaattacggcgcaggaagcgttatc
atctgggaccggggtttctatcgtcacccctctgcaggagatgagaacgaaaacgagaaa
cttcttctggacggattaagaaaaggggatatgaagtttgtcctcgaaggggaaaaactt
cggggtgaattcgcgctggtcaggatgggaaaggacgggaagtcgtggctgctcctgaag
aaaaaagaccgctatgcaagcaagggggaaattctccaggagaaccgttccgtcgtgtcc
cataaaaccctggaggagatgctcgaagccggcggccagaaatctttcaaacaaaaaaaa
ataaatcagatccggcttcacgaagcgaaggaaagcgaagagctgcatgatgcgccggtt
aaaccgatgccgcacaacataaaaccgatgctcgcgaccctggccagggaaccgttcgac
catccggactgggtcttcgaagtgaaatgggacgggtaccgggccatcgcagagatgcgg
gacggagacgtcgcgctctattcccgaaacctgctctcgttgcaacaaaagttttctccc
atcgcggacgcgttgcgggaatgcagattcgatgcggttctggacggcgaaatcgtcgtc
gtggatgatcggggacatcccgatttccagttgctgcagaattaccagaagtctggaaac
ggccatcttctttactacgtcttcgacctcctctacttccagggacatgatctgaccggc
ctccccctgctcaggaggaaagagatcctgaaaaaaatcctcccttcagccccgaaaata
aaatacagcgatcacgtatggaaagatggggtcctgtttttcaccgtcgtaagagaaaag
ggactggaggggatcatcgccaaacatgcgcaaagcgcgtaccagatggggataaggagc
cggcagtggctgaaggtgaagacgcggctcacgcaggagggggtgatcgccggtttcacg
gaaccgaggggtgggagaaagtgtttcggcaccctcgtcctgggcgtgttccaaggggac
gagctgatctacatcggccattcgggaggcggattcggggcgaaagatctgcaggaaatc
cgcgcgaaactggagcccctgatccggaaggaatgcccttttaaagtgcggccggagacc
aataccccggccacctgggtaaagccggagctggtctgcgagatttccttatccggctgg
actgaagatgccgtcatgagacaccccgttttcctgcggctgcgcgaggacaaaaccgcc
cgcgaagtggtgcgcgacagcggcggcgaaggaggtaacctatga

DBGET integrated database retrieval system