Gardnerella vaginalis ATCC 14019: HMPREF0421_20940
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Entry
HMPREF0421_20940 CDS
T01344
Name
(GenBank) exonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gvg03019
]
HMPREF0421_20940
03009 Ribosome biogenesis [BR:
gvg03009
]
HMPREF0421_20940
Messenger RNA biogenesis [BR:
gvg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF0421_20940
Ribosome biogenesis [BR:
gvg03009
]
Eukaryotic type
Pre-60S particles
RNases
HMPREF0421_20940
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Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
ADP39022
UniProt:
E3DAC8
LinkDB
All DBs
Position
complement(1152901..1153608)
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AA seq
235 aa
AA seq
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MAEAKEDLTFTPEESRLIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKPS
DAAVAHMNDFVRNMHTSSGLVDECNKNGLPLEEAQKQVVEYVKRFLPEHGKAHLAGNSVG
SDKKFLDRYMPDLMANLHYRVIDVSTLKEISRRLYPDVYRNKPAKHGGHRALADIIESID
ELRYYRDMMFVPAPGPSEAQAKAGAQHIESTSLLRDYERRGDALEDVNSAEKRDY
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagctaaggaagatcttacgtttacgccggaagaatcgcgcttaatttggatt
gattgcgagatgacgggactcgatattttccacgacgaattatgcgaagtatctgtagtt
ccaactgattttaatttgaaagttctagacgacggtattgatttagtgattaagccgagc
gatgctgctgtggctcatatgaacgatttcgtacgcaatatgcacacttcttctgggctt
gttgacgagtgtaataaaaacggtttgcctctagaagaagcacaaaagcaggttgttgag
tatgtaaagcgctttttgccagagcacggaaaagcacatcttgctggcaactctgttggc
tccgataaaaagttcctcgaccgttacatgccagatttaatggcaaatctgcactatcgc
gtaatagacgtaagcacgttgaaggagatttcgcgcagactttacccagacgtttaccgc
aataagccggcaaaacacggcggtcaccgtgcgctcgcggatattattgagtcgattgac
gagttgagatattaccgtgacatgatgtttgttccagctccaggcccaagcgaagcacag
gcaaaagctggcgcacagcacattgagagcacgagcttgcttcgcgactacgagcgccgc
ggagacgcgctagaagacgtaaattccgcagaaaagcgcgattattaa
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integrated database retrieval system