Paenibacillus sp. Y412MC10: GYMC10_0039
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Entry
GYMC10_0039 CDS
T01100
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gym
Paenibacillus sp. Y412MC10
Pathway
gym03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GYMC10_0039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gym03400
]
GYMC10_0039
Enzymes [BR:
gym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GYMC10_0039
DNA repair and recombination proteins [BR:
gym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GYMC10_0039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SecA_DEAD
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACX62349
UniProt:
D3E756
LinkDB
All DBs
Position
41786..45313
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIDVFSKDSDFKSITSGVHAGMREQLISGLSGSSRQILMAALHQDQQRPLLVVTHN
MFSAQKIADDLQEALSSDQVLLYPANELVAAESAVSSPETLAQRIDVLVRCARGFRGIVV
APFSGVRRLLPAPEVMSDARIVLHDGGTLVLDAFLNRMIEMGYERVERVERRGEMSVRGG
IIDFYPMTTAMAYRVELFDEDIDSIRTFDPTDQRSIDKVREVMITPCKEIIADAERLSRT
AETVVRLLEAQLERMSDRQAKLRLRDEIHREVEMLRERIYFPEIYKYISLLYPEKTNLYD
YMPKDTILIMDEPARLLETAKQLERDEAEWNLHLMQNGKSLPDLPLSLDTEELIYQHPYQ
SLMISIFLRQVPRMQPQNIVNVITRGMQDFHGQMNVLKAEMERWKKSGVQVMMLAGDAER
MDRMRRVLQDYGIEEPVMLEGHLQNGFEMPSVHAAIITESEMFSSKQRKTRKTTKNMDNA
ERIKSYTELKVGDYVVHQNHGIGKYMGIGTLEINGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKVYKLGGNEWTRVKNKVRSSVQDIADDLIKLYAERQSAPGYGFEKDTS
EQQEFEDMFPYDETPDQLRAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIE
GKQVAVLVPTTILAQQHYETFRERFANYPINIQVLSRFRSRKEQNETIKKVKQGSVDILI
GTHRLLSQDIVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNIDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGGQVYYLYNRVQGIQEMAAQ
ISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVSMLGEPSLPSKDWNTSIDLG
IDAYLPSDYIYDSIQKIEIYKKVAVVSSIDESAELEDELLDRFGELPLAVSNLLAVSRLK
VYGRTYGIDSITQRGDDVLLQFYEGQDKAVDTAGLAQIGNKFERRVQFEQGPAMAIRIKG
KGLSDQQLLELLEQFLEAAQGPFNLKGELQNAVKK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttattgatgtattttcgaaggattcggacttcaaatccataacgtct
ggcgttcatgccggcatgagggagcaattgatctccggtctttccgggtcgtccaggcag
atcttaatggctgccctgcaccaggaccagcagcgcccgctgctcgtggtcactcataat
atgttttcagcccagaaaatcgcagatgatttacaggaagcgctgtcatcggatcaagtg
ctgttataccctgcgaatgaactggtggcggcggagtcggccgtttcaagccccgagact
ctggcgcagcggatcgatgtgctcgtccgttgtgcaagaggcttccggggtattgtcgtt
gcgccattttccggcgtgcgccgccttctccccgcccccgaggtgatgtccgatgcccga
atcgtgcttcacgacggcgggaccctcgtgttggacgccttcctcaaccggatgatcgag
atggggtacgaacgcgtggaacgggtagagcgccgcggcgagatgagcgtccgcgggggg
atcatcgacttctacccgatgacaacagccatggcgtaccgcgtcgagctgtttgatgag
gatatcgactcgatccgaacctttgatccgacggatcagcgctccatcgataaggtccgg
gaggtcatgatcacaccgtgcaaggaaatcattgcagatgcggagcggctcagccgcacg
gcggaaacggtggtccgcctgctggaggcgcagcttgaacgcatgagcgaccgtcaggcc
aagctccggctgcgggatgaaatacaccgggaagtcgaaatgctgcgcgagcggatctac
ttccctgaaatctataaatatatctccttgttgtatccggagaagaccaatctgtacgat
tacatgccgaaggatacgattctgatcatggatgagcctgcccgtctgctggaaacagcc
aagcagttggagcgggatgaagcggaatggaatttgcatctgatgcaaaacggcaaatcg
ctgccggatctgccgttgtccctggatacggaggagctgatctatcagcatccttaccag
agtctgatgatctccatcttcctgcgccaggtgccgagaatgcagccgcagaatatcgtc
aatgtcattacgcgcggcatgcaggatttccatggccagatgaacgtgctcaaggccgag
atggaacgctggaagaagtcaggcgtccaggtcatgatgcttgccggcgatgcggagcgg
atggaccggatgcggcgggttctgcaggactacggcatcgaagaaccggttatgctggaa
ggccatctccagaacggcttcgagatgccctcggttcacgcggccattattacggagagc
gagatgttctcctcaaagcagcgaaaaacacgcaaaaccacgaagaatatggacaacgcc
gagcgcatcaagagttatacggagctcaaggtcggcgattatgtagtgcatcaaaaccat
ggcatcgggaaatatatggggatcgggacgctcgaaatcaacgggatccataaggactac
atgcatattctctacgctgggggcgataagctgtccgttccgatcgagcagatcgatctc
atccagaaatatgtcggttccgaggataaggagccgaaggtttacaagctgggcggaaat
gaatggacgcgggtcaagaacaaggttcgttcctccgttcaggatatcgccgacgatctg
atcaagctgtatgccgagcgtcagtctgcgccggggtacggatttgagaaggatacgtcc
gaacagcaggaattcgaggacatgttcccttatgatgaaacccccgatcagcttcgggcc
attaccgaaatcaaaaaagacatggagcagaaccgtccgatggaccggctcttgtgcggt
gacgtcggttacgggaaaacggaagtggcggttcgcgctgcattcaaggcggcgatcgaa
ggcaagcaggttgcggtgctggtaccgaccacgattctggcccagcagcattacgagacg
ttccgggagcgcttcgccaattacccgatcaatatccaggtgttgagccgtttccgcagc
cggaaggaacagaatgagacgatcaaaaaagtgaagcagggctcggtcgatattctgatc
ggcacacaccgactcctgtcccaggatattgtgttcaaggacctggggctgctgatcgtg
gatgaggagcagcgctttggcgttacgcataaggaaaaattgaaaaagctgaagaccaat
atcgacgtgctgacgctgacggcaacgccgattccgcgcacgctgcatatgtcgatgctc
ggcgttcgggacttgtccgtaatcgagacgccgccggagaaccgttttccggtgcagacg
tatgttgtggagcatagccagaccttggtgcgggaagccattgaacgggagctggcccga
ggtggccaggtatactatctctacaatcgggttcaagggatccaagagatggcagcccag
atatcgatgctggtgccggaggcccgcgtaggcgtagggcatggccaaatgtcggaaacg
gagctggagaagaccattctcgatttcctggacggcgaatacgacgtattggtgagcaca
agcattatcgagacgggtgtcgacattccgaatgtcaacacgcttatcgtgcacgacgcc
gacaaaatgggcctctcccagctgtaccagctgcgtgggcgcgtcggacgttccaaccgg
atcgcgtatgcctatttcacgtaccagcgggataaggtgctgaccgaagtagccgagaag
cggctgcagtcgattaaagagtttacggagctgggctccggattcaagattgcgatgcgg
gacttgtcgatccgcggagcgggcaacttgctcggggcggagcagcatggcttcatcgct
tcggtcgggtttgacctgtattcacagatgctggcagaggagattcagaaacgcaaagtc
agcatgctgggcgagccgtcattgccgtcgaaggactggaacacgtccatcgatttgggg
attgacgcttacctgccgtccgattacatctatgacagcattcagaagatcgaaatttat
aaaaaagtggccgttgtttcctcgatcgacgaatcggctgagcttgaggacgagctgctt
gaccgctttggcgagctgccgctggcggtaagcaacctgcttgccgtatcccgcttgaag
gtatatggccgtacgtacgggatcgattccattacccagcgcggggacgacgttctgctg
cagttttatgaagggcaggataaagcggtggacaccgcagggcttgcgcaaattggaaat
aagttcgaaagacgtgtacaatttgaacaagggccggctatggccattcgaatcaaaggc
aagggactatccgatcaacaactgttagaattgcttgagcaattcctggaggctgcacaa
gggccattcaacctgaagggagaactacaaaatgccgtcaagaaataa
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