Haloplanus aerogenes: DU502_12280
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Entry
DU502_12280 CDS
T05732
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
haer
Haloplanus aerogenes
Brite
KEGG Orthology (KO) [BR:
haer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
haer03016
]
DU502_12280
Enzymes [BR:
haer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DU502_12280
Transfer RNA biogenesis [BR:
haer03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DU502_12280
Prokaryotic type
tRNA splicing ligases
DU502_12280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
VESA1_N
Motif
Other DBs
NCBI-ProteinID:
AZH26087
UniProt:
A0A3M0DAU3
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All DBs
Position
2410063..2411523
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AA seq
486 aa
AA seq
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MTTREFDGIQLERVREFVWEIQREGDMRVPARVLASEALLEEIGEDKTLQQLKNATHLPG
ITGHAICMPDGHQGYGFPVGGVGATDTENGCISPGSVGYDINCGVRMMKTNLAYDDVQGH
EEELVNALFANVPSGLGGGGVVESDIDTVEAVLSRGVDWALEEGWAVEEDLTHCEDEGVR
PDADPSAVSQKAKDRGKNQLGSLGSGNHFLEVQRVTDVYRDDVADAYGLEPNQIVVLIHC
GSRGLGHQTCTDYLRKIEKRHGDLLAELPDKELAAAPAGSELAEEYYGAMCACINFAWVN
RQLIMHRVRQVFERVFDRSWESMDMHLLYDVAHNIAKKEIHTVDGEERELYVHRKGATRA
FPAGHPEVPSAYRDVGQPIIIPGSMGAGSYVLRGGESSMDLTFGSTAHGAGRLMSRTQAK
QEFWGETVQDELREQNQVYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTYP
VCNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccacacgcgagttcgacggcatccagctcgaacgagttcgggagttcgtctgggag
attcaacgggagggcgacatgcgcgtccccgcgcgagtgctggcgagcgaggcgctgctg
gaggagattggcgaggacaagacgctccagcagttgaagaacgcgacgcacctccccggg
atcaccggccacgccatctgcatgccggacgggcatcaggggtacggcttccccgtcggc
ggcgtgggagcgacggatacggagaacggctgtatatcgcccggttctgtgggttacgac
attaattgcggagttagaatgatgaaaacaaatctggcctacgacgacgtgcagggccac
gaggaggaactcgtgaacgccctcttcgccaacgtcccgtcgggcctcggcggcggcggc
gtcgtcgagagcgacatcgacaccgtcgaggccgtcctctcccgcggcgtcgactgggcg
ctcgaggaggggtgggccgtcgaggaggatctgacccactgcgaggacgagggcgtccgc
ccggacgccgacccgagcgccgtctcccagaaggcgaaggatcgaggaaagaatcagctc
gggagtctgggcagcggcaaccacttcctcgaagtccagcgcgtgaccgacgtgtaccgc
gacgacgtggccgacgcgtacggtctcgaaccgaatcagatcgtcgtcctgatccactgc
gggagccgggggctggggcaccagacctgcaccgactacctgcgaaagatcgagaagcgc
cacggcgacctcctggccgaactgccggacaaggaactcgcggccgcgcccgcgggctcc
gaactcgcggaggagtactacggcgcgatgtgtgcctgcatcaacttcgcgtgggtgaac
cgccagttgatcatgcaccgcgtccggcaggtgttcgagcgcgtcttcgaccgttcgtgg
gagtcgatggacatgcacctgctgtacgacgtggcgcacaacatcgcgaagaaggagatt
catacggtcgacggcgaggagcgcgaactctacgtccaccgcaagggggcgacgcgggcg
ttcccggcgggccaccccgaagtcccgtccgcctaccgcgacgtgggccagccgatcatc
atccccgggagcatgggcgcggggagctacgtccttcggggtggcgagtcgtcgatggac
ctcacgttcggctccaccgcccacggcgccggccggctcatgagccggacgcaggccaaa
caggagttctggggcgagacggtacaggacgaactccgcgagcagaatcaggtgtacgtc
aaggcccagagcggcgcgacggtggccgaggaagcccccggcgtctacaaggacgtggac
gaggtggtgcgcgtctctgacgccctcggcatcggtgacaaggtggcgcggacgtatccg
gtctgtaacatcaagggctag
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