Halomonas sp. R57-5: HALO3005
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Entry
HALO3005 CDS
T04029
Name
(GenBank) Oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
ham
Halomonas sp. R57-5
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ham03019
]
HALO3005
03009 Ribosome biogenesis [BR:
ham03009
]
HALO3005
Messenger RNA biogenesis [BR:
ham03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HALO3005
Ribosome biogenesis [BR:
ham03009
]
Eukaryotic type
Pre-60S particles
RNases
HALO3005
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
CEP36687
UniProt:
A0A0D6EB10
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All DBs
Position
I:complement(3238875..3239468)
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AA seq
197 aa
AA seq
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MSNEKTDSAVPRDDLLVWIDLEMTGLDPNIERIIEVATLITDADLNVVAEGPVIAVKQPD
SLLAQMDDWNQKTHGESGLVARVKASQVETAEAEQQTLAFLQQYAVAGSSPMCGNSIHQD
RRFLEREMPALLNFFHYRNLDVSTLKEVAKRWNPGALAGFSKQNVHLAMDDIKESIAELA
HYRNTFLRVDQRSDEEE
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgaaaagacggattcagcggtgccacgggatgatctgctggtgtggattgat
ctagagatgaccggtctggatcctaatatagagcgcatcattgaagtggccacactgatt
actgacgcggatttaaacgtggtcgcggaagggccggtgattgcggtgaaacagccggac
agcttgctggcgcagatggatgactggaatcagaaaacccacggcgagtcgggcttagtt
gcccgtgttaaagccagccaagtggaaactgctgaagccgagcagcaaaccctggcgttt
ttacagcagtacgcggtggcaggctcgtcgccgatgtgcggtaacagtatccatcaggat
cggcgttttctggagcgtgagatgcctgcgctgcttaactttttccactaccgcaatctc
gatgtgtcgacacttaaagaggtcgccaaacgctggaaccccggcgcgctggccggcttt
agtaagcaaaatgtgcacttggccatggacgatattaaagagtcgattgccgagctcgct
cattatcgcaatacgtttttgcgcgttgatcagcgcagcgacgaagaagaatag
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