Helianthus annuus (common sunflower): 110873328
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Entry
110873328 CDS
T05101
Name
(RefSeq) general negative regulator of transcription subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110873328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
han03000
]
110873328
03019 Messenger RNA biogenesis [BR:
han03019
]
110873328
04121 Ubiquitin system [BR:
han04121
]
110873328
Enzymes [BR:
han01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110873328
Transcription factors [BR:
han03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110873328
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110873328
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110873328
Ubiquitin system [BR:
han04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110873328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
Motif
Other DBs
NCBI-GeneID:
110873328
NCBI-ProteinID:
XP_021977948
LinkDB
All DBs
Position
8:86592493..86601159
Genome browser
AA seq
903 aa
AA seq
DB search
MSDEGEKTCPLCAEEMDLTDQQLRPCKCGYDICVWCWHHIMDMAEKDDTEGRCPACRTPY
NKEKIVGTASKCERLVAEMSVEKKQKSQKGKTKASEGRKHLSSVRVIQRNLVYIVGLPLN
LADEELLQRKEYFGQYGKVLKVSISRTAAGTIQHFANNTCSVYITYSKEDEAVRSIQSVH
GFVLEGRPLKACFGTTKYCHAWLRSMPCTNPDCLYLHEFGSQEDSFTKDEIISEYTRGRV
QQVTGATNELQRRSGNILPPAADDYSNNSTSSWGKPVSKTTTNQDSVNSKGSPPNSSSGR
SLALPAAASWGTRASNSQPFAANIASPNGPSKQKVETYTTQSSSTAAAVSPSSHNNEILK
KHIDENPTSETKRKLEHSESVQHATATDHRETLSEIPVEDDDVDVSDEEGIHQLSSDLSA
ISIVTNDESSHTHNEETLKEPFDDNNNNNNDNVIGERSWNKVQEAVINEVEADLLSFNNQ
RLSDPEVVTHNTHTYTGYVQNTPQSSHLNPNIPIANGDSYFHATDTVTDVSNGDHRTALD
LGENSIISNILSMDFDPWDESLTSPQNLAKLLGNSDKQQQASSQRVSSSRKMQNVNQSRF
SFAREDDESIDQRSNFNFQNFSTDAYPRQHTDSNGFSSFNFEESDRTAGGYPSLSPNKFS
ASRSQISAPPGFMGPSRAPPPGFASNERIEQTYDNLSGNNHMFDSSFLLRKVNQAPGAVY
NDGSISELEFMDPAILAVGGRVPSGVTSPGLDMRSNYPTQHTSYETDSNRLRLLMQRSFT
QQNLRFNELGGDNNNLSYPQRTDSYGVSSRIIDQTLLNNNHRSHYQQQQVGNLTSFQQAR
MTTSSNGHWGDGWNEVQNGNDIAMAEILRNERLGGFNKYYSGYEDTKYRVPSSGDLYNRT
FGI
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgaaggagaaaagacttgcccactctgtgctgaagagatggatttaacagat
cagcagctgaggccttgcaaatgtggctatgatatttgtgtatggtgctggcatcacatt
atggatatggctgagaaagatgatacagaagggaggtgtccagcatgtcgtacgccgtat
aacaaggaaaagatagtggggactgcatcaaaatgtgaaagactggtggctgaaatgagt
gtggagaagaaacaaaagtctcaaaaggggaaaacaaaagcttctgaaggtagaaagcat
cttagtagcgtgagggttatacaaaggaaccttgtttacattgtgggactgcctcttaat
ttagcagacgaagagcttctgcagcggaaagaatattttggtcagtacgggaaagtgttg
aaagtttctatatctcggacagcagctggcactatacagcattttgcaaacaatacttgt
agcgtatatattacttactcaaaggaggatgaagcggttcgaagtatacagtcagtacat
gggtttgttttggagggtagaccattgaaagcctgttttgggactacaaagtactgtcat
gcatggctgagaagcatgccttgcaccaatcctgactgcttatatttgcatgagttcgga
tcacaagaggatagcttcaccaaagatgaaataatatctgaatatacaaggggtagagta
caacaagttactggcgctacaaatgaattgcaacggcgttcagggaatattttaccacct
gcagcagatgattattctaataacagcacttcttcatggggaaaacccgttagtaaaact
actacaaatcaggattctgtaaacagtaaagggtccccgccaaatagtagttctgggaga
tcattagctcttcctgcagcggcctcctggggaacacgcgcttcaaatagccagcctttt
gctgcaaatatagcgagtcccaacggaccttctaagcaaaaggtggaaacttacactaca
caatcatcttcaacagcagcagcggtgagcccgtcatcacataacaacgagatactaaag
aaacacattgacgaaaatccgacttccgagacaaaacgtaagctagaacattcagaatcc
gtacaacacgctacagccacagatcaccgagaaaccctgtctgagatacccgtagaagat
gatgacgtggacgtctctgacgaagaaggaatccaccagttatcttctgacttgtcagca
atcagcatcgttacaaatgacgagtcatcacatacacacaatgaagagacgcttaaagaa
ccgtttgatgataataacaacaataataatgataatgttattggagaacggtcatggaat
aaagtacaagaagctgtgattaacgaagtggaagccgatttgttatcttttaataatcaa
aggctcagtgatccggaagttgttacacataatacccatacatatacaggctatgtacag
aatacgcctcaatcgtctcatctgaaccctaatattcctatagctaatggtgattcttat
tttcatgctacagatacagttacagatgtatcgaatggtgatcatagaactgctttagat
ttaggagagaacagtataatatctaatattttgtcaatggattttgacccgtgggacgag
tcgttgacctcgcctcagaatctggctaaattattaggtaacagtgataaacaacagcag
gcgtcgtctcaaagagtttcaagttcgagaaaaatgcaaaacgttaatcagtcgaggttt
tccttcgcgagagaggacgatgaatccatagatcaaaggtcaaatttcaattttcagaac
ttcagtacagatgcttatccacgtcagcatacggatagcaacggtttctcttcttttaac
tttgaggaatctgatcgtactgctggcggttatccgtctctgtctcccaataagttttca
gcttcaagatcccaaatttctgctcctcctggatttatgggacccagcagagctccaccc
cctggctttgcttctaacgagagaattgaacaaacttatgataacctatctgggaataat
catatgtttgacagctcatttttactgagaaaagtgaatcaagcaccgggtgctgtatat
aacgatggtagtattagtgagcttgagttcatggatcccgcaatattggcggttggtggt
agggttcctagtggggtcactagtccaggtttagacatgagatcaaactaccctacacaa
cacacctcttacgaaaccgatagtaaccggcttcgacttttgatgcaaagatctttcaca
caacaaaacctaagattcaacgagttaggcggagataataataacttatcataccctcaa
agaacagattcttacggagtatcttctagaatcatagatcaaactctgctcaataataat
catcgatcccattatcagcaacaacaggtgggtaatttaactagtttccaacaggcacgg
atgacgacatctagtaacggacattggggggacggttggaatgaagttcagaacggaaat
gatattgcaatggcggagattttacgaaatgagagactcggtgggttcaacaagtattat
tccggatatgaagatacgaagtatcgggtgccgagttcaggtgatctgtataaccggacg
tttggaatttga
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