KEGG   Helianthus annuus (common sunflower): 110890950Help
Entry
110890950         CDS       T05101                                 

Definition
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
han  Helianthus annuus (common sunflower)
Pathway
han03030  DNA replication
han03410  Base excision repair
han03420  Nucleotide excision repair
han03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:han00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110890950
   03410 Base excision repair
    110890950
   03420 Nucleotide excision repair
    110890950
   03430 Mismatch repair
    110890950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:han03032]
    110890950
   03400 DNA repair and recombination proteins [BR:han03400]
    110890950
Enzymes [BR:han01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110890950
    6.5.1.6  DNA ligase (ATP or NAD+)
     110890950
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     110890950
DNA replication proteins [BR:han03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    110890950
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     110890950
DNA repair and recombination proteins [BR:han03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     110890950
   NER (nucleotide excision repair)
    Other NER factors
     110890950
   MMR (mismatch excision repair)
    Other MMR factors
     110890950
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 110890950
NCBI-ProteinID: XP_021994286
LinkDB All DBs
AA seq 790 aa AA seqDB search
MLSLRSCCHTLSHTTTSITTTLSHSKLSLSSISKQFLKISIKHSTNMSSSRPSAFDALMS
NARAAAAKNKTTSSSSSPKKRKTLTLDSKSPINSTSITESKPSETLNPTRIEPETREFNE
PKPDKQNPDSVNSEDETKGLKKQKVKVINVDESVVELRKKPVKFDPKKAAYWVGGERVPF
LFLVRVFDEISKESGRIVITEIVCNMLRTVIETTPDDLVAVVYLLANRIAPAHEGLELGI
GDASIIKALAEACGAKEAHIKKQYKELGDLGLVAKASRSSQPLMRKPQPLTVAKVFDTFK
VIAKESGKDSQDKKKNHIKGLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLTALGHAIVY
TEKHPSSRTDSPLEEAAKIVKQVYSVIPVYDKIVPALLSGGVWDLPKTCCFSPGVPVGPM
LAKPTKGVSEILDKFQNMEFTCEYKYDGERAQIHYLEDGTVQIYSRNAERNTEKFPDVVV
AASRVKKPNVTSYVLDCELVAYDRKKQKILPFQILSTRARKNVVMSEIKVDVCIYAFDLL
YLNGQQLLQEQLITRRERLYESFEEEPGYFQLATAITSNDLEEIQTFLDTAVNASCEGLI
IKTLTRDATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRVGGYGAFLLACY
DNNKDEYQTICKIGTGFSEAMLEERSTSLRSKVIPKPKSYYRYADSINPDVWFEASEVWE
VKAADLTISPVYCAAIGEVDPNKGISLRFPRLLRVREDKGPEEASSSEMVADMYNAQKHT
QSNNQDDEDE
NT seq 2373 nt NT seq  +upstreamnt  +downstreamnt
atgctctcactccggtcatgctgtcacactctctctcacaccacaaccagcataaccacc
acactctctcactctaaactctctctctcatcaatctccaaacaatttctcaaaatctca
atcaaacactccaccaacatgtcatcatctcgcccttctgccttcgatgcactcatgtcc
aacgcacgtgccgccgccgccaagaacaaaacgacatcgtcctcatcttcccctaaaaaa
cgcaaaaccctaaccctagattcaaaatccccaattaattccacttcaattaccgaatct
aaaccttcagaaacgttaaacccgacccgaatcgaaccggaaacacgtgaatttaatgaa
ccaaaaccggataaacaaaaccctgattcggttaattcagaggatgaaacaaaggggttg
aagaaacagaaagtgaaagtgattaatgtggatgaatctgttgttgaattgaggaagaag
ccggttaaattcgacccgaaaaaggctgcgtattgggtcgggggagagcgtgtgccgttc
ctgtttctcgtgagggttttcgatgagatttcaaaggagtcggggcgtatagtgattacc
gagattgtttgtaacatgttgaggactgtgattgagacgacaccggatgatctggtggcg
gttgtgtaccttttagcgaataggattgcgccggctcatgaggggctggagctcgggatt
ggggatgcgtcgattattaaagcgcttgcggaagcgtgtggtgcaaaagaagcgcatatt
aagaagcagtataaggagcttggagacttgggccttgttgcgaaagcgagccgttcgtcg
cagccgttgatgcgtaaaccgcagccattgacggtggcaaaagttttcgatacgtttaag
gttattgcaaaggaatctgggaaagacagtcaagataagaagaagaatcacataaaggga
cttcttgttgcggcaactgattgtgaacctcaatatttgatccgtctacttcagacgaag
ttgcgaattggtttagcagagcaaacccttttgaccgctctcgggcatgcgatagtctat
accgagaaacatccatcatcacgcacggattcgcctctagaagaggctgctaaaatcgtg
aaacaagtgtattcggtaattcctgtatatgacaaaatcgttcccgctttactttctggt
ggcgtatgggatctacccaaaacgtgttgtttttcacccggtgttccggttggacctatg
ttagctaagcctactaaaggagtatctgaaattttagataagtttcaaaacatggagttc
acgtgtgaatacaaatatgacggggaacgggcccagattcattatttggaggatggtacg
gttcagatatatagcagaaatgctgaaagaaacacagaaaagtttcctgatgttgttgtt
gctgcttcaagggttaagaaaccgaatgtaacatcatatgttctggactgtgaactggtt
gcgtatgatcgcaagaagcagaaaattctaccatttcagattttaagcactcgtgctcgc
aaaaacgttgtcatgagtgaaatcaaggttgatgtatgcatatacgcatttgatctgctg
tatttgaatggacaacagcttttacaagaacaacttattactcgtagagagcgtctgtat
gaatccttcgaggaagaacctgggtatttccagcttgcaacagctataacatcaaacgat
ctggaagaaatacaaacgttcttggatactgctgttaatgccagttgtgagggattgatt
atcaaaacattaacccgagatgctacatacgagcctgcaaaacgatcaaataactggctc
aagttgaaaaaagattatatggacagcatcggtgactcattagatttagtacccattgcc
gcctttcatggccgaggaaaacgtgtaggtggatatggcgcttttctccttgcgtgttat
gataataataaggatgaatatcaaaccatttgcaagattggcactggattttcagaagcc
atgcttgaagaacggtcaacaagtcttcgatctaaagtgatcccaaagccgaagtcgtat
tatcggtatgcagattccataaatccagatgtgtggtttgaggcatctgaggtttgggag
gttaaagctgctgacttgaccatcagcccggtttattgtgctgcaatcggcgaggttgat
cctaataagggaatttcgctacgattcccacgtttacttcgtgttcgagaagataaaggt
cccgaagaagcttcatcttcagaaatggttgctgacatgtataatgcccaaaaacatacc
caaagtaacaatcaagatgatgaagatgaatga

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