Halanaerobium hydrogeniformans: Halsa_1298
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Entry
Halsa_1298 CDS
T01349
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
has
Halanaerobium hydrogeniformans
Pathway
has03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
has00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Halsa_1298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
has03019
]
Halsa_1298
Messenger RNA biogenesis [BR:
has03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Halsa_1298
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
T4_Rnl2_C
Motif
Other DBs
NCBI-ProteinID:
ADQ14725
UniProt:
E4RKQ5
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Position
complement(1464170..1465846)
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AA seq
558 aa
AA seq
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MNDKNKIKNVTMTTLGGVGEIGKNMWVLEIGEDMLIIDSGVKFPENDLLGIDLVIPDFEY
VIKNKDRINGIVLTHGHLDHIGGLPYLLKEINAPIYGTKLTLGLLEGNLKEHRLLKDCRL
KIVHSGKEIQVGNFTVEFIRVNHSIADTCALAIHTPLGPIVYASDFKFDQTPVDGEVADF
HKFAELGDSPEGVLALFSDSTNVERDGYTLSEKVVGETVDEIFRGAKERIIVATFASNIH
RVQQVVDAAFKYNRKVAFTGRSMLNNVDIARRLGYLQVPEDMIVDIRDCSSLPDNEVTLL
TTGSQGEPMAALTRMARGDHYHINIKEGDTVMISASAIPGNEKYVGETINKLFRRGANVI
YEDVSGVHVSGHASKEELKLMLNLVKPKYFVPVHGEYRHLYKHANLAEEVGIPRDNIYIA
DVGDKINFAEDKVSKKDNVQSGDVLIDGLGIGDVGNIVLRDRKMLSEDGIIIVVVTIDKK
GNILVGPDIITRGFVYIRESEELIEAATQRVEDALKECEENNVTEWSVLKNTIRNSLNNY
VYQKIKRNPMILPVIMEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaatgataaaaataaaataaaaaatgttactatgacaacactcggtggagtgggagag
attggaaaaaacatgtgggttctggaaattggagaagatatgttgataattgactcggga
gttaaatttccagaaaatgatttattaggaattgatttagtgattcctgatttcgaatat
gtgattaaaaacaaggatcggattaatggaatcgttttaacccacggtcatttagatcat
attggtggattaccatatctgttaaaagaaattaatgcaccaatttatgggactaaactt
actcttggtcttttagagggcaatttaaaggaacataggcttttaaaagattgtagatta
aaaatagttcactctggaaaggaaattcaggttggtaattttactgtagaatttattaga
gttaatcacagtattgccgatacctgtgccctggctatccatactccccttggaccgata
gtttatgcaagtgactttaaatttgaccaaactccagtcgatggagaagtggcagatttt
cataaatttgctgaactaggtgatagcccagaaggggttttagcccttttttcagatagt
acaaatgtagaacgggatggttatacattatctgaaaaagttgttggggaaactgttgat
gagatttttagaggtgccaaagaaaggataattgttgctacttttgcttctaatatacat
cgtgttcagcaggttgtagatgctgcatttaagtataatagaaaagtagcttttacaggt
cgtagtatgcttaataatgttgatattgcgcgccgacttggttatcttcaggttccagaa
gatatgattgtagatatcagggactgctctagtctgcctgataatgaagtaaccctgctt
acaaccggtagtcagggagaacccatggcagctttaactagaatggcccgtggtgatcat
tatcatatcaatatcaaagagggagatacagttatgatttcagcctctgcgatacctgga
aacgagaaatatgtaggagagaccattaataagctttttagaagaggagctaatgttatt
tatgaagatgtatcaggtgttcatgtatctggacatgctagtaaagaagaattaaaacta
atgttaaatctagttaagccaaaatactttgttccagttcatggagaatacagacatctt
tataaacatgcaaatttggctgaagaagtcggtattcctagagataatatttatattgct
gatgttggagataagataaactttgcggaagataaagtttctaaaaaggataatgtccaa
tcaggtgatgtattgatagatggtttaggtattggagatgttggtaatatagttttaaga
gatagaaagatgctttctgaagacggtattattattgttgtagttacaattgataaaaaa
ggtaatattctggttggtccggatattattaccagaggttttgtctatattagagaatct
gaagaattaattgaagctgctacccaaagggttgaagatgcacttaaagaatgtgaagaa
aataatgtcacagaatggtcagttttaaagaatacaattagaaattcacttaataattat
gtctaccaaaaaatcaagagaaatccaatgattttacctgttataatggaggtataa
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