Halanaerobium hydrogeniformans: Halsa_1928
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Entry
Halsa_1928 CDS
T01349
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
has
Halanaerobium hydrogeniformans
Pathway
has03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
has00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Halsa_1928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
has03021
]
Halsa_1928
03400 DNA repair and recombination proteins [BR:
has03400
]
Halsa_1928
Enzymes [BR:
has01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Halsa_1928
Transcription machinery [BR:
has03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Halsa_1928
DNA repair and recombination proteins [BR:
has03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Halsa_1928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
DUF6551
Motif
Other DBs
NCBI-ProteinID:
ADQ15346
UniProt:
E4RJC6
LinkDB
All DBs
Position
complement(2117904..2121383)
Genome browser
AA seq
1159 aa
AA seq
DB search
MLNVNNFDSMRIGVASAEQIRDWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDYEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPCTHIWYFKGIPSRLGLIMDM
SPRALEKVIYFVHYIVTDPGDTPLSEKQLLPESEYREAKMKYGNSFKAEMGAEAVKELLG
RIDVEEEVKELKKEVKEATGQRRKRAVRRLEVMDGLLESRLNPANLVLDAIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIIRNEKRMLQESVDALIDNGR
RGRPVTGAGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKMHQCGLPKK
MALELFKPFVMKGLVEEGHAHNIKNAKRMVEDVDEAVWGILEECIKDHPVLLNRAPTLHR
LGIQSFEPVLVEGKAIKLHPLVCPAYNADFDGDQMAVHLPLSAEAQTESRLLMLSTTNLL
NPSDGSPITIPTQDMVLGIFYLTTLKEGKAGEGKIFANSDEAVRAFETNKVHLQSPVKVR
LNGEIIETTIGRVIFNEALPANMSFQNKRIAKSDLGDLITDLYDEVGNDITAETLDKIKE
MGYDYATRSGISIAVSDAEIPPAKKEIVTNAEDKVHPIENHYRRGAITENERYQKVVDIW
NKAKDDVTDELLDNLDESNNIYIMAISGARGNTSQISQLAGMRGLMADSSGRIIDVPIRS
SFREGLDVLEYFLSTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCGTEQGIS
VEAIGAKGKTAVEPLSERCVGRFTAEDINSPESGEVIIEANSMINKKIMNKIEEAGIEEV
KIRSVLTCEAQHGVCRKCYGKNLATGKLVDIGESIGIVAAQSIGEPGTQLTMRTFHTGGV
AGDDITQGLPRVEELFEGRTPKGQAIMTEREGYVTVIEKKNSKRVVIENDEGKKKTYKIP
YGSKMIVKDGDHVTEGDKLTEGPLDPNVLLKVKGEKAVQNYLLEEVQNVYRSQGVEINDK
HIEVIIRQMMKKLKIVKPGDTELLPGGLVNRYDYRKSNKEAAAKNKATAVAKPELLGITK
ASLATDSFLSAASFQETTRVLTEASLEGKVDPLLGLKENVIIGQLIPAGTGMSYYRDIDV
VKEDGTLFEDLKETLTDVD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaatgtgaataatttcgattcaatgaggatcggagttgcttctgcagaacagata
cgtgactggtcccgaggcgaggtcaaaaaaccggaaactattaattatagaacattaaag
ccggaaaaagatgggcttttctgtgagaaaatttttggtcccaccaaggattacgaatgt
cactgtggtaaatacaagcgggttcgctataaaggtgttgtgtgtgaccgctgtggagta
gaagtaactagatctaaagtgagaagagaaagaatggggcatattgaattagctgcacca
tgcacacacatttggtatttcaaaggtatccccagtcgtctgggtttaattatggatatg
tcaccacgagcattagaaaaagttatttattttgttcactatatcgtaacagatcctggt
gatactccattaagcgaaaaacagctgctgcctgaaagtgaatatcgagaagcgaagatg
aaatacggtaatagttttaaagctgagatgggagccgaagctgttaaagaactgctgggt
agaatagatgtagaagaagaagtgaaagaattaaaaaaagaagtaaaagaagcaactgga
cagcgccgcaaaagagcagttcgcaggcttgaagtgatggatggacttttagaatctaga
cttaatcctgcaaatttagttcttgatgcgattcctgtaattccacctgatttaaggcct
atggtccagcttgatggtggtcgcttcgctacttctgatttaaatgatttatacagaaga
gtaataaatcgtaataatagattaaaaagactcttggatcttggagctcctgagataatt
attcgcaatgaaaaaaggatgcttcaggaatcagttgatgctttaattgacaatggtaga
agaggaagacctgtaaccggagccggaaatagacctcttaaatctttgagtgatatgctt
aaaggtaaacagggccgttttcgtcagaatcttctcggtaaacgggtagattactcaggt
cgttctgtaatagttgttggtcctgatcttaagatgcatcagtgtggcctgccaaaaaaa
atggcactggagttatttaagccttttgtaatgaaaggattagttgaagaaggtcatgct
cataacattaaaaatgctaaacgaatggttgaagatgtagatgaagcagtttggggtatt
ttagaagaatgtattaaagatcatcctgttctattaaacagggcaccaacactgcatagg
ttaggtattcagtcttttgagcctgttttggttgaaggaaaggctatcaaattacatccg
ctggtctgtccagcttataatgcggactttgatggtgaccagatggctgttcatttgcct
ttatcagctgaagctcaaacagaatcacgtcttttaatgttatcaacaactaacttgcta
aacccttcagatggtagtccaattaccattccaactcaggatatggttttaggaatattc
tacttaactactttaaaagaaggaaaagctggtgaaggaaaaatatttgcgaatagtgat
gaagctgtcagagcttttgaaacaaacaaagttcacctgcaatcaccagttaaagtaaga
cttaatggcgagataattgaaacaacaattggaagggttatttttaatgaagcattacct
gccaatatgtctttccaaaataaaagaatcgccaaaagtgatcttggtgatttaattacc
gatctctatgatgaagttggcaatgatataacagctgaaacattagataagatcaaagaa
atgggatatgattatgcaacaagatctggtatttctatagcggttagtgatgcagaaatt
ccacctgcaaaaaaagagattgtaacaaatgccgaggataaagtacatccaattgaaaat
cattaccgcagaggtgcgattacagaaaatgagcgttatcaaaaagttgtagatatctgg
aataaagccaaagatgatgtgacagatgaactgcttgataacttagatgaaagtaataac
atttatataatggctatttcaggtgctcgtggtaatacctctcaaatctctcagttagca
ggaatgcgtggtctaatggctgattcctcaggacgaatcattgatgttccaattcgttct
agtttccgtgaaggtctagatgttttagaatatttcttatcaactcacggggcgcgtaaa
gggcttgcagatactgctttgagaactgctgactcaggttatttaaccagaagacttgtg
gatgtttctcaggatgttattgttcgagaagatgattgtggaacagagcagggtatttcc
gttgaagctatcggtgcaaaaggtaaaacagctgttgagcctttatcagaaagatgtgtt
ggtcgttttactgctgaagatattaattctcctgaaagtggagaagttattatagaagct
aattcaatgattaataaaaaaattatgaataaaatagaagaagcaggtatagaagaagtt
aaaattagatcagttcttacatgtgaagcacaacatggtgtctgccgtaaatgttatggt
aaaaatcttgctacaggaaaactggtagatattggagagtcaataggtattgttgcagca
caatcaattggtgagcctggaactcagctgacaatgcgtaccttccatacaggtggtgtt
gctggtgatgatattactcagggtttacccagagtagaagagctttttgaaggtagaact
ccaaaaggtcaggctataatgactgaaagagaaggttatgtaacggtaatagaaaagaaa
aactctaaaagagttgttatagaaaatgatgaaggcaaaaagaaaacctacaaaatacct
tatggctcaaaaatgatcgtaaaagatggtgaccatgtaaccgagggagataaattaact
gaaggaccattagatcccaatgttctgcttaaagtaaaaggtgaaaaagcagtacaaaat
tacctcttagaagaggttcagaatgtttatcgttctcaaggtgtagaaattaatgataaa
catattgaggttattatccgtcagatgatgaaaaaattaaaaattgtcaaacctggtgat
actgaattgctacctggtgggcttgtaaatcgttatgattaccgtaagtcaaataaagaa
gcagctgccaaaaacaaggcgacagcagttgcaaaaccagaactgcttggaattaccaaa
gcctcactagctactgattcattcctatcagcggcttcattccaggaaacaaccagagtt
ctgactgaagcttccttagaaggcaaggttgatccactgctaggacttaaagaaaatgta
attattggtcagttaattcctgcaggtaccggaatgagttattatagagatattgatgta
gtaaaagaagatggtacactttttgaagatttaaaagaaactttaacagatgtagattaa
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