Hafnia alvei: AT03_19990
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Entry
AT03_19990 CDS
T03425
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
hav
Hafnia alvei
Pathway
hav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AT03_19990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hav03400
]
AT03_19990
DNA repair and recombination proteins [BR:
hav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AT03_19990
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AT03_19990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_23
AAA_25
NACHT
nSTAND3
Viral_helicase1
cobW
DUF1924
ScfRs
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
AIU74454
UniProt:
A0A097R6W0
LinkDB
All DBs
Position
4387729..4390560
Genome browser
AA seq
943 aa
AA seq
DB search
MDKIEIRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVPLAAQTVSQMVDNVLTQPEGKRLMLLAPIVKDRKGEHTKTLENLAAQGYIRARID
GEVCDLSDPPKLELQKKHSIEVVVDRFKVRDDMAQRLAESFETALELSGGSAIVADMDDD
KAPELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVVQNAEL
SLAGGAIRGWDRRNFYYFQMLKSLADHYHFDVEAPFGSLDAKTQKAVLYGSGKESIEFKY
INDRGDITVRNHPFEGVLHNMERRYKETESSAVREELSKFISNRSCASCHGTRLREEARH
VFVENTTLPVISDLSIGDALTFFRDLKLQGQRAQIAEKILKEIGDRLKFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT
VIVVEHDEDAIRAADYVIDIGPGAGVHGGEVVAQGSVDEIMAVPESLTGQFLSGKREIAV
PAERVPADATKVLKLIGASGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQT
QLNGATLAEPAPYRAVEGMEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELFAGVPE
SRARGYNPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
KGKSIHEVLDMTIEEAREFFDAVPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKL
SRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGGGGGQILVSGTPETVAECEQSHTARFLKPLLNKK
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatagaaatacggggtgctcgcacccacaacctgaaaaatatcaatctgatc
attccacgcgacaaactgattgttgtgaccggtctgtcaggttcaggcaagtcctctctg
gcgtttgatacgctgtatgctgaaggtcagcgtcggtatgtcgaatcgttgtctgcctat
gcgcgtcagtttctttctttgatggaaaagccagacgttgaccacattgagggtctatct
ccggcaatttccattgagcagaaatctacctcgcacaacccgcgttcaaccgtggggaca
atcactgaaatccatgattatctgcgtctgctgtttgcccgcgttggtgagccacgctgc
ccggatcatgatgttcccttagccgcacaaaccgttagccaaatggttgataacgtactg
acgcagccggaaggcaaacgtctgatgctgctggcaccgatcgtcaaagatcgcaaaggt
gagcatactaaaacgctggaaaatctggcggcacagggctacatccgcgcccgtatcgac
ggcgaggtctgcgatctttccgatcctcctaagctggagcttcagaaaaaacacagcatt
gaagttgtggtcgatcgtttcaaagtgcgtgatgacatggctcaacgcttagcggaatcc
tttgaaaccgcgctagagctgtctggcggcagcgccattgttgccgatatggatgacgat
aaagcgcctgagcttctgttttccgctaactttgcctgcccaatttgtggctacagcatg
cgtgagcttgaaccacggttgttttcgttcaacaacccggctggcgcttgcccaacctgt
gatggcttaggtgtacagcaatatttcgatcccgatcgcgtggtgcaaaacgccgagctg
tcactggccggcggcgcaattcgcggctgggatcgccgtaacttttactatttccaaatg
ctgaaatcgttagcagatcattatcattttgatgtggaagcgccgttcggtagtttggat
gctaaaacacagaaagccgtgctgtatggctccggcaaagagtcgattgagttcaaatat
atcaatgaccgcggcgacattacggtacgcaaccatccgtttgaaggcgtattgcacaat
atggagcgccgctacaaagaaacggaatcttctgcggtacgcgaagagctgtcgaaattc
atcagcaaccgttcatgcgcatcgtgccacggcacccgtctacgtgaagaagcacgtcat
gtattcgttgagaacactacgctacctgtgatttcagatcttagtattggcgatgctcta
acgttcttccgcgatcttaaactacagggccagcgtgcccagattgccgaaaaaatcctg
aaggaaatcggcgaccgcctgaagttcttggttaacgtgggcctgaactatttaagcttg
tctcgctctgccgaaacactgtccggcggtgaagcgcagcgcattcgcttggcgagtcag
atcggcgcaggtctggttggtgtgatgtacgtactggatgagccttcaatcggcctccat
cagcgcgacaacgaacgacttctggaaaccttgatccacctgcgcaatctgggtaacacc
gtgattgtggtggagcatgatgaagatgccattcgcgcagcagattacgtcattgatatc
ggcccaggcgcgggcgtgcacggtggtgaagtggttgctcaaggctccgtggatgagatt
atggcggtgcctgaatctcttaccggccagttccttagcggtaagcgtgaaatcgcggtg
cctgcggaacgcgttcctgccgatgccaccaaagtgcttaagctgattggtgccagcgga
aacaacctgaaggacgttacgctgacgctacctgtcggtcttttcacctgtatcaccggc
gtttctggctccggtaaatccacgctgattaacgacaccctgttcccgattgcgcaaacc
cagctaaacggtgcaacgctcgcggaacctgcgccttatcgcgcggtggaaggaatggaa
catttcgataaagttatcgatattgaccaaagcccaatcggccgtacgccgcgctcgaac
ccagcaacctataccggcatctttacgccggtacgcgagttgtttgcaggcgtgccagaa
tcacgcgcgcgcggttataacccaggacgctttagctttaacgttaaaggcggacgctgc
gaagcctgccaaggcgatggggttatcaaggtcgaaatgcatttcttgccggatatctac
gtaccttgcgatcaatgtaaaggtaagcgttataaccgtgaaacgctggagattaaatac
aaaggcaagagcatccacgaagtgctggatatgacgattgaagaagcgcgtgagttcttc
gatgcggttccggcgctagcgcgtaagctgcaaacgctgatcgatgtcggcctgtcctat
attcgcttaggtcagtcagcaaccacgctatctggcggcgaagcgcagcgcgtgaagcta
tctcgcgaactctccaaacgcggaaccggccaaacgctgtatattctggacgagccaacc
accggcctgcattttgccgatattcagcaactgctggcggtattgcatcaattacgcgat
cagggcaacaccatcgtggtgattgagcataacttggacgtgattaaaacggctgactgg
atcgttgatttggggccagaaggcggcggcggcggcggtcagattctggtatcaggcaca
ccggaaacggtggctgagtgtgagcaatcacatactgctaggttcttgaaaccgttactg
aataaaaaatag
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