Hyphomonadaceae bacterium UKL13-1: AEM38_05185
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Entry
AEM38_05185 CDS
T04338
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hbc
Hyphomonadaceae bacterium UKL13-1
Pathway
hbc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hbc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AEM38_05185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbc03021
]
AEM38_05185
03400 DNA repair and recombination proteins [BR:
hbc03400
]
AEM38_05185
Enzymes [BR:
hbc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AEM38_05185
Transcription machinery [BR:
hbc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AEM38_05185
DNA repair and recombination proteins [BR:
hbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AEM38_05185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AMS30822
UniProt:
A0A7U4QW53
LinkDB
All DBs
Position
1134970..1135986
Genome browser
AA seq
338 aa
AA seq
DB search
MLEKNWKLLIRPDKTVIEHGFDPARKAKLIAEPLERGFGMTLGNALRRVLLSSLRGSAIT
SVQIDGVVHEFSSIAGVREDVTDIVLNIKGVALVMHADGPKRMTLRAQGPGEVTAGEIQA
GSDIEILNPEQVLCTLDDGAEIRMEFTVENGKGYVTADANRPEDAPIGLIAVDALYSPVK
RVAYKVENTREGQVLDYDRLVMEVETNGAMTPEDAIAYAARIIQDQLDVFINFEEAKTKK
VEETRPELPFNPALLKRVEELELSVRSANCLKNDNIIYIGDLIQKTEAEMLRTPNFGRKS
LNEIKEVLAQMGLHLGMEAPNWPPENIDELAKKFEDQM
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgaaaaaaattggaagctgttgatccgcccagataagacggtcattgaacatggt
ttcgatccagcgcgtaaagcgaagctgatcgcagagccattggagcgcgggtttgggatg
actttgggcaatgcgctgcgtcgcgtgcttttgtcgtctttgcgcggttcggccatcacc
tcggtgcagatcgacggtgttgtccatgagttctcctcgattgctggtgtgcgtgaagac
gtgaccgacatcgtgttgaacatcaaaggcgtggctttggtcatgcacgctgacggtcca
aagcgcatgactttgcgcgcgcaaggcccgggcgaagtgactgctggcgaaattcaagcc
ggtagcgacatcgaaattctgaacccagagcaagttctgtgcacgctggacgacggcgct
gaaatccgcatggaattcaccgttgaaaacggcaagggctatgtgacggcggatgctaac
cgtcctgaagatgcgccaatcggcttgatcgcggttgacgcgctctacagccccgtgaag
cgcgttgcctataaggtggaaaacacccgcgaaggccaagtactcgactatgatcgtctg
gtcatggaagttgaaaccaatggtgccatgacgccagaagatgcgattgcttatgcagcc
cgtatcattcaggaccaattggacgtcttcatcaacttcgaagaagccaagaccaaaaag
gttgaagaaacccgcccagaattgccattcaaccctgctttgttgaagcgtgtggaagaa
ttggaattgtcggtgcgttcggcaaactgcttgaagaacgacaacatcatctatatcggc
gatctgatccagaagaccgaagcagaaatgttgcgcacgccaaacttcggccgcaagtcc
ttgaacgaaatcaaggaagtcctcgcacaaatgggtctccatttgggcatggaagcgcca
aactggccccctgaaaacatcgacgaactcgctaagaagttcgaagaccaaatgtaa
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