Halomonas beimenensis: BEI_0346
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Entry
BEI_0346 CDS
T05125
Symbol
ligD1
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hbe
Halomonas beimenensis
Brite
KEGG Orthology (KO) [BR:
hbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BEI_0346 (ligD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbe03400
]
BEI_0346 (ligD1)
Enzymes [BR:
hbe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BEI_0346 (ligD1)
DNA repair and recombination proteins [BR:
hbe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BEI_0346 (ligD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ATJ81333
UniProt:
A0A291P371
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All DBs
Position
complement(362956..363885)
Genome browser
AA seq
309 aa
AA seq
DB search
MQIDGRHIETSNRDKPFFPEAGLTKGDLVDYYADLGDTMLVHLDGHPVSLQRFPDGLDGE
GFYQKDASAHFPDWLTRVRFPKREGGHFMAPVIDSRAALVYLADQAMITPHPYLARADDL
ERPDRLIFDLDPPEGGRDVASVRRAALDLRGLLDELSLSAWVQTTGSRGFHVVVPLDAGA
DFDASRAFARDTARVLVRRHPDRYTLAQRKRQRRGRIFLDVMRNAYGATAVAPYAVRALA
GAPVATQLSWPELERGATPRGWTLGNLRRRLAQKADPWAEMARHAVALSAHREALDRLLA
REPPAEEEA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcgatgggcggcacatcgagacctcgaaccgcgacaagccgttcttccccgag
gcgggactcaccaagggcgacctggtcgactactacgccgacctcggcgacaccatgctg
gtgcacctcgacggccacccggtcagcctgcagcgcttccccgacggcctcgacggcgag
ggcttctaccagaaggacgcctcggcccactttcccgactggctgacgcgggtgcgcttc
cccaagcgcgagggcggccacttcatggcgccggtcatcgacagtcgcgcggccctggtc
tacctggcggaccaggcgatgatcactccgcacccctacctggcccgggccgacgacctc
gagcgccccgaccggctgatcttcgacctggacccgcccgagggcggccgggacgtcgcg
tcggtgcggcgtgccgccctggacctgcgcggcctgctggacgaactgtcgctgagcgcc
tgggtgcagaccaccggttccaggggcttccatgtggtggtgccgctcgacgccggcgcc
gacttcgacgccagtcgcgccttcgcccgggacaccgctcgggtactggtccgccgccac
cccgatcgctacaccctggcccagcgcaagcgccagcggcggggacggatcttcctggac
gtcatgcgcaacgcctacggcgccaccgcggtggcgccctatgccgtgcgcgccctggcg
ggcgcgcccgtcgccacgcagctgtcctggccggagctggaacgcggggccaccccccgg
ggctggaccctgggcaacctccgccgtcgcctggcccagaaggcggacccctgggccgag
atggctcgccacgccgtcgcgctctccgcccatcgtgaggccctcgaccgcctgctggcg
cgcgagccgcccgccgaggaggaagcctga
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