Halomonas beimenensis: BEI_1238
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Entry
BEI_1238 CDS
T05125
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hbe
Halomonas beimenensis
Pathway
hbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BEI_1238 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbe03019
]
BEI_1238 (rne)
03009 Ribosome biogenesis [BR:
hbe03009
]
BEI_1238 (rne)
Enzymes [BR:
hbe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BEI_1238 (rne)
Messenger RNA biogenesis [BR:
hbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BEI_1238 (rne)
Ribosome biogenesis [BR:
hbe03009
]
Prokaryotic type
rRNA processing factors
BEI_1238 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Trypan_PARP
Motif
Other DBs
NCBI-ProteinID:
ATJ82225
UniProt:
A0A291P5S2
LinkDB
All DBs
Position
complement(1303782..1307153)
Genome browser
AA seq
1123 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKEPSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGEERAQLKEAMSQLTVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITEEAGKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDNEQVHQEALA
FIRQVMPSYQQKIKRYADEVPLFSRFQIESQIETAYEREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMSPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCVGQGTIRDVRSISLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRAVLADIERRQGVRVVLLPHPDMDTPHY
DVQRLRDDHVDEEGTAQKSSYELPMETEVGKEPEAAFGKPVKRDEAAVKTVVHHEPAPAS
LQEDASSKPAAPAAAKTETAPPVPAAREGVLGRLVKGFARLLGSEESGQETAEPKESRDA
QSRQAASARQGAPKGREEQRGTRSGSGNGRQRGRRGGQGAERSEAGRGESRSPRSQRQAE
DKAKPEATEGQGRGGRGGRGRRQDEGRPSEARKPQERKGQEARKPQQAQAEGTRPEAKPQ
KREAVEQAATTEAKPQRTRNNPRQRRRQHALNPAAVAEQERLQAEAAQATATEEVQAPPQ
ADTESQPKAEAKPEPKAEAKPEAKAEPKPQAKPKPKPEAKPEAKAEPKPEPKAEPKPEAK
PEPKAEAEDKPEAKPEAKAEPKPEPKAEAKPEPKAEAKPEPKAEAKPEPKAEAKPEPKAE
AKPEPKAETQPQAKAEPKPETKPEPKAEAKPETKPETQAEAKAETQPEPKAEPQPEPKAE
TKPQAKAEPKPQAKAEPKAEAKPEAKPETQAEAKAETQPEPKAEPQPEAKAEAQPQAKAE
AKPEPKAETKPEPKAEPKPQAKAEAQPQAKAEAQPEPKAEAKPEPKAETKPEAKPEPEAR
TESESQSQAEKPAPRRRRRRAHNDPREIRRREQEAKRQEGNKG
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggatgctcatcaacgcgacccagcccgaagagctgcgcgtcgcactggtcgat
ggacaacgcctgtatgacctggacatcgaatccggtgcccgggagcagaagaaagccaac
atctaccgcggcaagatcacccgcgtcgaaccctccctcgaagccgccttcgtcgacttc
ggcgccgagcgtcacggcttcctccccctcaaggaaatctcccgcgagtacttcatcaag
gagccctcgggccgccccagcatcaaggaagtgctcaaggaaggccaggaagtcatcgtc
caggtcgacaaggaggagcgcggcaacaagggcgcggcgctgaccaccttcatcagcctg
gccggccgcttcctggtgctgatgcccaacaaccctcgcgccggcggcatctcgcggcgc
atcgagggcgaggagcgggcgcagctcaaggaagccatgagccagctgaccgtgcccgac
aagatgggcctgatcgtgcgcaccgccggcatcggccgctctcccgaggagctgcagtgg
gacctggactacctggtgcaggtgtgggagtcgatcaccgaggaagccggcaagcgcccc
gctcccttcctgatctaccgcgagtccaacgtcatcatccgcgccatgcgcgactacctg
cgccaggacatcggcgaggtgctgatcgacaacgagcaggtgcatcaggaggccctggcc
ttcatccgccaggtcatgccctcctaccagcagaagatcaagcgctacgccgacgaggta
ccgctgttctcccgcttccagatcgagtcgcagatcgagaccgcctacgagcgggaggtc
aagctgccctccggcgggtccatcgtcatcgaccacaccgaggcactggtctccatcgac
atcaactcggcacgcgccacccggggcagcgacatcgaggagacggcgctgcagaccaac
ctggaagccgccgacgagatcgcccgccagttgcggctgcgtgacatcggcggcctggtg
gtcatcgacttcatcgacatgagcccggcgcgcaaccagcgcgaggtcgagaaccggatg
cgcgatgcgctcaagctcgaccgcgcccgggtgcagatcggccgcatctcgcgcttcggc
ctgatggagatgtcccgccagcgcctgcgcccgtccctcggcgagaccagcggcgtggtc
tgcccgcgctgcgtcggccagggcaccatccgcgacgtgcgctccatctcgctgtccatc
atgcgcctcatcgaggaagaggccatgaaggagcgcagcgcccagatccgcgccatcctg
ccggtgccggtggccacctacctgctcaacgagaagcgggccgtgctggccgacatcgag
cgtcgccagggcgtgcgcgtggtgctgctgccgcaccccgacatggacaccccgcactac
gacgtccagcgcctgcgcgacgatcatgtcgacgaggaaggcacggcccagaagtccagc
tacgagctccccatggagaccgaggtgggcaaggagccggaagccgccttcggcaagccg
gtcaagcgcgacgaggcggcggtgaagaccgtcgtccaccacgagccggcgccggcttcg
ttgcaggaagacgcctcatccaagccggcagctccggcggccgccaagaccgagaccgcg
ccgcccgtgccggcggcgcgcgaaggggtcctgggtcgcctggtgaagggcttcgcccgc
ctgctgggcagcgaggagagcggccaggagaccgccgaacccaaagagtcccgcgacgcc
cagtcacgtcaggcggcgtccgcccgccagggcgctcccaagggacgcgaggagcagcgc
ggcaccaggtccggtagcggcaacggccgtcagcgaggccggcgcggcggtcagggcgcg
gaacgcagcgaggcgggacgcggggaaagtcgctcgcccaggtcccagcgccaggccgag
gacaaggccaagccggaggcgaccgaaggccagggccgcggaggccgcggggggcgcggc
cgtcgccaggacgagggtcgcccttcggaggcgcgcaagccccaggagcgcaagggacag
gaggcacgcaagccacagcaggcccaggcggaaggcaccaggcccgaggccaagccgcag
aagcgcgaggccgtcgagcaggccgcgacgaccgaggccaagccccagcgcacccgcaac
aatccgcgtcagcgtcgccgtcagcatgccttgaacccggcggccgtggccgagcaggaa
cgcctccaggcggaagccgcccaggcgaccgctacggaggaagttcaggcgccccctcag
gctgacaccgagtcgcagcccaaggccgaggccaagccggagcccaaggccgaagcgaag
ccggaagccaaggccgagcccaagccgcaagccaagcccaagcccaagcccgaagcgaag
ccagaagccaaggccgagcccaagccggaacccaaggccgagcccaagcccgaagcgaag
ccggagcccaaggccgaggccgaggacaagcccgaagcgaagccggaagccaaggccgag
cccaagccggagcccaaggccgaggccaagccggagcccaaggccgaggccaagccggag
cccaaggccgaggccaagccggagcccaaggccgaggccaagccggagcccaaggccgag
gccaagccggagcccaaggccgagacccagccgcaagccaaggccgagcccaagcccgaa
acgaagccggagcccaaggccgaggccaagcccgaaacgaagccggaaacccaggccgag
gccaaggccgagacccagccggagcccaaggccgagccccagccggagcccaaggccgag
accaagccgcaagccaaggccgagcccaagccgcaagccaaggccgagcccaaggccgag
gccaagcccgaagcgaagccggaaacccaggccgaggccaaggccgagacccagccggag
cccaaggccgagccccagccggaagccaaggccgaagcccagccgcaagccaaggccgag
gccaagccggagcccaaggccgagaccaagccggagcccaaggccgagcccaagccgcaa
gccaaggccgaggcccagccgcaagccaaggccgaggcccaaccggagcccaaggccgag
gccaagccggagcccaaggccgaaaccaagcccgaagcgaagccggagcccgaggccagg
accgaatccgagtcgcagtctcaggccgagaagccggcgccccgccggcgtcgccgccgc
gcccacaacgaccctcgagagatccgtcggcgtgagcaggaagccaagcgtcaggaaggc
aacaagggctga
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