KEGG   Halomonas beimenensis: BEI_1238
Entry
BEI_1238          CDS       T05125                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
hbe  Halomonas beimenensis
Pathway
hbe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hbe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BEI_1238 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hbe03019]
    BEI_1238 (rne)
   03009 Ribosome biogenesis [BR:hbe03009]
    BEI_1238 (rne)
Enzymes [BR:hbe01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BEI_1238 (rne)
Messenger RNA biogenesis [BR:hbe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BEI_1238 (rne)
Ribosome biogenesis [BR:hbe03009]
 Prokaryotic type
  rRNA processing factors
   BEI_1238 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 Trypan_PARP
Other DBs
NCBI-ProteinID: ATJ82225
UniProt: A0A291P5S2
LinkDB
Position
complement(1303782..1307153)
AA seq 1123 aa
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKEPSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGEERAQLKEAMSQLTVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITEEAGKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDNEQVHQEALA
FIRQVMPSYQQKIKRYADEVPLFSRFQIESQIETAYEREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMSPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCVGQGTIRDVRSISLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRAVLADIERRQGVRVVLLPHPDMDTPHY
DVQRLRDDHVDEEGTAQKSSYELPMETEVGKEPEAAFGKPVKRDEAAVKTVVHHEPAPAS
LQEDASSKPAAPAAAKTETAPPVPAAREGVLGRLVKGFARLLGSEESGQETAEPKESRDA
QSRQAASARQGAPKGREEQRGTRSGSGNGRQRGRRGGQGAERSEAGRGESRSPRSQRQAE
DKAKPEATEGQGRGGRGGRGRRQDEGRPSEARKPQERKGQEARKPQQAQAEGTRPEAKPQ
KREAVEQAATTEAKPQRTRNNPRQRRRQHALNPAAVAEQERLQAEAAQATATEEVQAPPQ
ADTESQPKAEAKPEPKAEAKPEAKAEPKPQAKPKPKPEAKPEAKAEPKPEPKAEPKPEAK
PEPKAEAEDKPEAKPEAKAEPKPEPKAEAKPEPKAEAKPEPKAEAKPEPKAEAKPEPKAE
AKPEPKAETQPQAKAEPKPETKPEPKAEAKPETKPETQAEAKAETQPEPKAEPQPEPKAE
TKPQAKAEPKPQAKAEPKAEAKPEAKPETQAEAKAETQPEPKAEPQPEAKAEAQPQAKAE
AKPEPKAETKPEPKAEPKPQAKAEAQPQAKAEAQPEPKAEAKPEPKAETKPEAKPEPEAR
TESESQSQAEKPAPRRRRRRAHNDPREIRRREQEAKRQEGNKG
NT seq 3372 nt   +upstreamnt  +downstreamnt
atgaaaaggatgctcatcaacgcgacccagcccgaagagctgcgcgtcgcactggtcgat
ggacaacgcctgtatgacctggacatcgaatccggtgcccgggagcagaagaaagccaac
atctaccgcggcaagatcacccgcgtcgaaccctccctcgaagccgccttcgtcgacttc
ggcgccgagcgtcacggcttcctccccctcaaggaaatctcccgcgagtacttcatcaag
gagccctcgggccgccccagcatcaaggaagtgctcaaggaaggccaggaagtcatcgtc
caggtcgacaaggaggagcgcggcaacaagggcgcggcgctgaccaccttcatcagcctg
gccggccgcttcctggtgctgatgcccaacaaccctcgcgccggcggcatctcgcggcgc
atcgagggcgaggagcgggcgcagctcaaggaagccatgagccagctgaccgtgcccgac
aagatgggcctgatcgtgcgcaccgccggcatcggccgctctcccgaggagctgcagtgg
gacctggactacctggtgcaggtgtgggagtcgatcaccgaggaagccggcaagcgcccc
gctcccttcctgatctaccgcgagtccaacgtcatcatccgcgccatgcgcgactacctg
cgccaggacatcggcgaggtgctgatcgacaacgagcaggtgcatcaggaggccctggcc
ttcatccgccaggtcatgccctcctaccagcagaagatcaagcgctacgccgacgaggta
ccgctgttctcccgcttccagatcgagtcgcagatcgagaccgcctacgagcgggaggtc
aagctgccctccggcgggtccatcgtcatcgaccacaccgaggcactggtctccatcgac
atcaactcggcacgcgccacccggggcagcgacatcgaggagacggcgctgcagaccaac
ctggaagccgccgacgagatcgcccgccagttgcggctgcgtgacatcggcggcctggtg
gtcatcgacttcatcgacatgagcccggcgcgcaaccagcgcgaggtcgagaaccggatg
cgcgatgcgctcaagctcgaccgcgcccgggtgcagatcggccgcatctcgcgcttcggc
ctgatggagatgtcccgccagcgcctgcgcccgtccctcggcgagaccagcggcgtggtc
tgcccgcgctgcgtcggccagggcaccatccgcgacgtgcgctccatctcgctgtccatc
atgcgcctcatcgaggaagaggccatgaaggagcgcagcgcccagatccgcgccatcctg
ccggtgccggtggccacctacctgctcaacgagaagcgggccgtgctggccgacatcgag
cgtcgccagggcgtgcgcgtggtgctgctgccgcaccccgacatggacaccccgcactac
gacgtccagcgcctgcgcgacgatcatgtcgacgaggaaggcacggcccagaagtccagc
tacgagctccccatggagaccgaggtgggcaaggagccggaagccgccttcggcaagccg
gtcaagcgcgacgaggcggcggtgaagaccgtcgtccaccacgagccggcgccggcttcg
ttgcaggaagacgcctcatccaagccggcagctccggcggccgccaagaccgagaccgcg
ccgcccgtgccggcggcgcgcgaaggggtcctgggtcgcctggtgaagggcttcgcccgc
ctgctgggcagcgaggagagcggccaggagaccgccgaacccaaagagtcccgcgacgcc
cagtcacgtcaggcggcgtccgcccgccagggcgctcccaagggacgcgaggagcagcgc
ggcaccaggtccggtagcggcaacggccgtcagcgaggccggcgcggcggtcagggcgcg
gaacgcagcgaggcgggacgcggggaaagtcgctcgcccaggtcccagcgccaggccgag
gacaaggccaagccggaggcgaccgaaggccagggccgcggaggccgcggggggcgcggc
cgtcgccaggacgagggtcgcccttcggaggcgcgcaagccccaggagcgcaagggacag
gaggcacgcaagccacagcaggcccaggcggaaggcaccaggcccgaggccaagccgcag
aagcgcgaggccgtcgagcaggccgcgacgaccgaggccaagccccagcgcacccgcaac
aatccgcgtcagcgtcgccgtcagcatgccttgaacccggcggccgtggccgagcaggaa
cgcctccaggcggaagccgcccaggcgaccgctacggaggaagttcaggcgccccctcag
gctgacaccgagtcgcagcccaaggccgaggccaagccggagcccaaggccgaagcgaag
ccggaagccaaggccgagcccaagccgcaagccaagcccaagcccaagcccgaagcgaag
ccagaagccaaggccgagcccaagccggaacccaaggccgagcccaagcccgaagcgaag
ccggagcccaaggccgaggccgaggacaagcccgaagcgaagccggaagccaaggccgag
cccaagccggagcccaaggccgaggccaagccggagcccaaggccgaggccaagccggag
cccaaggccgaggccaagccggagcccaaggccgaggccaagccggagcccaaggccgag
gccaagccggagcccaaggccgagacccagccgcaagccaaggccgagcccaagcccgaa
acgaagccggagcccaaggccgaggccaagcccgaaacgaagccggaaacccaggccgag
gccaaggccgagacccagccggagcccaaggccgagccccagccggagcccaaggccgag
accaagccgcaagccaaggccgagcccaagccgcaagccaaggccgagcccaaggccgag
gccaagcccgaagcgaagccggaaacccaggccgaggccaaggccgagacccagccggag
cccaaggccgagccccagccggaagccaaggccgaagcccagccgcaagccaaggccgag
gccaagccggagcccaaggccgagaccaagccggagcccaaggccgagcccaagccgcaa
gccaaggccgaggcccagccgcaagccaaggccgaggcccaaccggagcccaaggccgag
gccaagccggagcccaaggccgaaaccaagcccgaagcgaagccggagcccgaggccagg
accgaatccgagtcgcagtctcaggccgagaagccggcgccccgccggcgtcgccgccgc
gcccacaacgaccctcgagagatccgtcggcgtgagcaggaagccaagcgtcaggaaggc
aacaagggctga

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