Candidatus Hodgkinia cicadicola TETUND2: HCTETUND2_001
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Entry
HCTETUND2_001 CDS
T03596
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hcd
Candidatus Hodgkinia cicadicola TETUND2
Pathway
hcd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCTETUND2_001 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcd03021
]
HCTETUND2_001 (rpoB)
03400 DNA repair and recombination proteins [BR:
hcd03400
]
HCTETUND2_001 (rpoB)
Enzymes [BR:
hcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCTETUND2_001 (rpoB)
Transcription machinery [BR:
hcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCTETUND2_001 (rpoB)
DNA repair and recombination proteins [BR:
hcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCTETUND2_001 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
Motif
Other DBs
NCBI-ProteinID:
AHL30972
LinkDB
All DBs
Position
1..3708
Genome browser
AA seq
1235 aa
AA seq
DB search
MKPSAPRLSSVSPALTFKRRELAPANTRWQRLPFDNVQERLYANSLLGSLDGTATSSRLR
RELCALFPASSQLFGIELRDFWIERYVLTTSRALALKLEQGYAFNIKVSCLYYAKLCDAL
CVAHRDDVQAPLFHLPKISDRGTFEIFGLEKVFVSQLARIPGVRASVKGSTVEVCLVSTL
GRALTVFANERSAWLATDSKSKIEYFQALMNAGVKRWHVLKALFETAVLLRHKLSWKRLT
WRRSQSDVNPMEYGARRRLRSVPEFLAARAGGVLATAAVFHGGKVVAHIGAKFDFDCRAT
LPVRVVYDCGTVRSFLNVEHCNRAFQIDTQSLAAVNLGKAGRTMLNSIIGQQLTSDCVSK
RDLIFLWKRLRSENVHRVAQDGDARIVRSCGDVVLDCVLFELKHILKLGPESIQASDDVL
LLEFKRVKRAVSKLFGMSELCQYAEQLNSLTELCHKLRLTYMGEGGVTFRTATESLRDVQ
RWHFGRVCPVESPEGQNIGLVCSYALFSSVASSGLIQTAFNKVLNGRLSNKFEHLDCFRA
RNYATLVLNKRLSKRQALCTINGAIRHLPSARVELCYSSASQLFSPAVNLIPFLGYNDST
RALMAANMQKQAIPLTEPSAPIVGTGLERVVIRCTGHNTICVNNALIIHSDSYKVVAHEY
ELGSYRVYKLPLPWATNQGTCFRVRATVRPGQLVKSGQHIIECQSSANSEVALGANLLVA
FMVWNGLNYEDSVVLSEDVVARGALQSLHMLECEVKLYKTVLGDEVLADVFESDRRLTEN
GVVRVGSVVSDGDVLVGKFTPSCVNCSQIVYRDSSYKLPVGTGRATVVSVQFSADASGVQ
ASDLNYCAACYSAIRETYAKRMAVLAETSKLFRYDSIDCEIFCWASGELNIQRAINNLYN
RYCEELGALIKQCSNELDSAADAKLKPNKADTNVIEVIKLKLLIRKSIQAGDKISGRHGN
KGVISRVVLAADMPYMEDGTPIDVVLNPLSVPSRMNLGQVLETHLGLISYKWGLEFKHIL
KLHNQLNGNDSVIELARLKLSELYPDSDFSCCDAVSVMEMVRETCEGARFACHPFIKLSE
PCVKSLFRRVGFKNGFSAQIKLYDGKTGSPFDRKVTVGSMYILKLNHMVDDKLNARATGP
YSIVTQQPLKGKANKGGQRLGEMEVWALQAYGVSFLLREALTVKSDDVEGRKAINDGILF
DRIEMRTTWNESFLVLIREMCSLCLNVELRAKFCR
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
ttgaagccctcggcgccgaggttgagctccgttagcccagcgttaacgtttaaaaggcga
gagttagcgcccgctaacactcgctgacagcgcttgccttttgataacgtacaagagagg
ctgtacgcaaacagcttgcttggttcactagatggcacggcaacaagttcaagactgcgg
cgtgagctttgcgctttgtttcccgccagctcgcagctgtttgggatagagcttcgcgat
ttttggatagagcgatacgttctaactacttccagggcgttagcactcaaactggagcaa
gggtacgctttcaatattaaggtaagctgtttatattacgctaagctttgcgacgctttg
tgcgtagctcacagagacgatgtgcaagcgccattgtttcatttgcccaagatctctgac
agaggcacgttcgagatattcggcttggagaaggtgtttgtgtcgcaactggcgcggatt
ccgggtgtgcgcgcgagtgtaaagggttcgacggttgaggtgtgtttggtgtcgacgtta
gggcgcgcgttaacagtgtttgcgaacgaacgcagcgcttggttagcgactgactctaag
tccaaaatcgagtactttcaagctctaatgaacgcgggcgttaagcgctggcatgtgtta
aaggcgctgtttgagactgctgtgctgctgcgtcataagctgagctggaaacggcttacg
tgacgtcgttcgcaaagcgacgttaatccgatggaatatggcgcgcgccggcgattaaga
tctgtgcccgagtttttggcagcgcgcgccggcggcgttctggccaccgcggctgtgttt
cacggtggcaaagttgtggcgcacatcggcgcaaagtttgattttgactgtagagcaacg
ctgccagtgagggtggtgtatgattgcggcactgtgcgctcatttttaaatgttgagcat
tgtaatagggcgtttcaaatcgacacgcagagtttggcagctgtcaacctcggcaaagct
gggagaactatgcttaacagcattataggtcagcagctcacatcggactgtgtaagcaaa
cgcgatcttatattcttgtgaaagcgtttgagaagcgaaaacgtgcacagggtggcgcaa
gacggcgacgcgcggatagtgagaagctgtggcgatgttgtgttggattgtgtgctgttt
gagcttaagcacattctaaagctggggcctgagagcatccaggcttcggacgatgtgctg
cttttagagtttaagcgagtcaagcgcgcagttagcaagctttttggtatgtctgagctt
tgccagtatgctgaacagctcaatagcttaacggagttgtgtcataagcttaggttaacg
tatatgggcgaaggcggtgtaacgtttcgaactgctacagaaagcttaagagatgttcag
cggtgacattttgggcgagtgtgtcccgtggaatcgccggagggtcagaacattggctta
gtgtgctcttacgctttgttttcttcagtggcttcgagtgggttaatacaaactgcgttt
aacaaagttcttaatggccgattgagtaacaagtttgaacacctcgattgctttagagct
cgaaactatgccacactagttttaaacaaaagattaagcaagcggcaagcgttgtgtact
ataaacggcgcaatacgacatctgccttccgctcgggtggaattgtgttactcttcggct
tcgcagctgttctcgcccgcagtgaacctaattcctttcttaggctataatgattccacg
cgtgcgctgatggctgccaatatgcagaagcaagctatacccttaacagagccctcggcg
cctatagttggaactggtttggagcgcgttgttatacgctgcaccggacataacacaatt
tgtgttaacaatgctctaattattcattccgattcttacaaagtggtggcgcatgagtat
gagctgggctcatacagggtttataaattgcctttgccttgggccactaaccagggcact
tgctttagggttagagcgacggtacgccccggtcagctagttaaatcgggtcaacacatt
atagagtgtcaatctagcgccaactctgaagtcgctttgggcgctaatttgttagttgcg
tttatggtttggaatgggcttaattacgaagactccgtggtgctgtccgaagacgtggtg
gccagaggcgcgctccagtcgctgcatatgctggaatgcgaagtcaagctttacaaaaca
gtattgggtgatgaggtattagccgatgtgtttgagtcggatcggcgtctaactgaaaat
ggcgtagtgcgcgtaggcagtgtggtgagcgacggcgatgtgctggttggcaagtttacg
ccttcgtgtgttaactgtagtcagattgtgtacagggactcgtcttataaactgccagtg
ggcactggcagagccactgtggtaagtgtgcagtttagtgcggacgcttcaggtgttcaa
gcgtccgatttaaactattgcgcggcgtgttatagcgcgatacgcgagacttacgctaag
cgtatggcggtgttagccgaaactagtaagctgtttcgttatgacagcatagactgcgaa
atattttgttgagcctcgggcgagttaaatatacagcgcgcgattaataatttgtataat
cgatattgcgaagagcttggcgcgcttattaaacagtgctccaacgagcttgattccgcg
gcggacgccaagctcaagccaaacaaagcggacactaacgtgattgaggtgattaagctc
aagctgcttattcgcaaatccatccaagctggcgacaaaatcagtgggaggcacggtaac
aaaggggttatatcgcgtgtcgtgcttgcggccgatatgccctacatggaggacggcacg
ccgatagacgtggttctaaatcctttaagtgtgccctctaggatgaaccttgggcaagtg
cttgagacacacttaggcttaataagctataagtgaggcttggaatttaaacacattctg
aagctgcataatcagcttaatggcaacgatagtgttattgagcttgctaggcttaaacta
agcgagttgtatcctgattccgattttagttgctgcgacgctgttagcgttatggaaatg
gttcgagaaacgtgtgagggtgcgagattcgcttgccatccgtttattaaactcagcgag
ccgtgtgttaagtcgctttttagacgcgtcggttttaaaaacggtttttcagcgcaaata
aaattgtacgacggcaaaactggttcgccgtttgatagaaaggtgaccgtcggcagcatg
tacattttaaaactaaatcatatggttgatgacaaattgaatgctcgcgccaccggaccg
tactcaatagtgacccaacagcctttaaaaggtaaggctaacaaaggcggtcagcgtttg
ggcgagatggaggtgtgagctctccaagcttatggggtgtcgtttcttttaagagaagcg
cttactgttaaaagcgacgatgttgagggcagaaaggcaattaacgatggcatactgttt
gatagaatcgaaatgcgcactacttggaacgagagcttcctggtgttaataagggaaatg
tgttcgctgtgtctaaacgttgagcttagagccaaattctgtaggtag
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