Candidatus Hodgkinia cicadicola TETUND2: HCTETUND2_040
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Entry
HCTETUND2_040 CDS
T03596
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hcd
Candidatus Hodgkinia cicadicola TETUND2
Pathway
hcd03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
hcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCTETUND2_040 (dnaE1)
03430 Mismatch repair
HCTETUND2_040 (dnaE1)
03440 Homologous recombination
HCTETUND2_040 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcd03032
]
HCTETUND2_040 (dnaE1)
03400 DNA repair and recombination proteins [BR:
hcd03400
]
HCTETUND2_040 (dnaE1)
Enzymes [BR:
hcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HCTETUND2_040 (dnaE1)
DNA replication proteins [BR:
hcd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HCTETUND2_040 (dnaE1)
DNA repair and recombination proteins [BR:
hcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HCTETUND2_040 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
Motif
Other DBs
NCBI-ProteinID:
AHL31003
LinkDB
All DBs
Position
complement(25888..28824)
Genome browser
AA seq
978 aa
AA seq
DB search
MFANLKVHSVYSILESALSLEKIAELTLRHSQHSVCLTDNNLHGALEFCVKCRGVNVQPI
VALKVLIDDQRALFNVPTKPSIATLIVRTERGYTNLLKLINASAPELGHRVITLAQLEAH
SEGLTLLLGEVGGLAWEVYKQFEANAIAARLDLLRQIVDNNLCFELQRRSFVNQQFETTL
TEYAEAHSLLVVATNETFFEAPQDYSVYKALCVVSRTQHSSVTSQNYFKSYAEMLTRFAD
VPRALNNCGRLCNACEFYLEPRPLTLPAFLSSQTLENGVLYKRSITSLERLFYSVGKVNK
RAYYKRLIGELRVVSRTHYAGYFLMVMDFVLWAKTNNILVGPGRGSAAGSLLAYCANITN
VDPLQYGLLFERFLNAARANPPDIDVDFCHVAREELIRYVQARYTAANVAQISTFGVLQL
RGAIKDAGRCLQIKFETLNNVCAALPTSPRVKVTNSMLLACCAKALIPQHVAIELIATAQ
KLVGVYRHVGTHAAGVVISNSPLADQVPVVWDSQNKINVTQYNMGWVDAAGLPKFDLLGL
KTLTVVGGVLELLAIIGIEPNINFKDEKTYSFIGRGLLLATFQLESEGITKHVKHMKPSS
LNDLAALIALYRPGPIQQIKLYSDIKHGRAKRAKIHSKIDSVLDDTYGIIVYQEQVMLIA
QALSGYSLIEADELRKAMAKKNKSEMLAHTKRFIDGAVANGVDKRLAAGVFETLVRFADY
GFNKSHAVAYAMLAYTTAYLKCNFTLEFYAVCLTVETNEANEITDLYYEALELEVEFAQP
SVQTPYNEFKIINSVIQFPLSAIKNVPQTAISSIAASKANKPFASLTDFCCKCDSKLITE
NVLRSLILGGAFDCFQLSRAKMISNLKLIQDCINLKTDISLIALDYCEPELETLYSEYCL
IGCFVSENPIDRFTCECQSGFELAVVVAQTKTTLMLVLRTHRLEVSTDIDYPLQLGQVYA
CEIVHIRSKPVCKRLYQV
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgctaacttaaaagttcactcagtttattcaattctggaaagcgcgttaagcctc
gaaaaaatcgcagaactaacacttagacactcgcaacacagcgtgtgcttaacagacaac
aacttacacggcgcgttagagttttgtgtaaaatgcagaggcgtgaatgtacagccgatt
gtggctctcaaggtgctaatcgatgatcagcgggcgctgtttaacgtgccaacaaagcct
tcaatagccacactaatagttcgtacggagcgcggttacacaaacttgctgaaattaata
aacgctagcgcgcccgagcttggacatcgcgttataacgttagctcagcttgaagcgcat
tcggaagggttaacgttgctgcttggcgaagtgggcggattagcttgagaagtgtacaaa
caatttgaagctaacgctattgcggcacgactcgatctgttgcgccaaattgttgacaac
aatttgtgttttgaattgcaaaggcgttcgtttgtaaaccaacagttcgagactacgcta
acggagtatgctgaagcgcattcgctgctggtagtggccaccaatgagacattctttgaa
gcgcctcaggactatagtgtgtataaagcgctttgcgtagtgtcgcgcacacagcattcg
agcgtcaccagtcagaattatttcaaaagttacgccgaaatgttaacgcgtttcgcagat
gtgccgcgcgcattaaacaattgtgggcggctttgcaacgcgtgcgagttctatttagag
cctcggccgctaacattacctgcgttcttaagctcacaaacgcttgaaaacggtgtgttg
tacaaacgttcaataacctcgttggagcgtttgttttatagcgtgggcaaagtcaacaag
cgcgcgtattacaaacgtcttatcggagagctacgcgtagtgtcgcgcacacactacgcg
ggttatttccttatggtaatggactttgttttatgagctaaaacgaataacatactagtg
ggaccgggccgcggctcggccgctggctctttgctagcgtactgcgccaacattaccaac
gtagaccctttgcaatatgggctattatttgaacgatttttaaacgcggcgcgcgctaat
ccgcccgatattgacgtggacttttgccacgtggcgcgcgaagagttaataagatatgtt
caagcgcgatacaccgctgccaacgttgcccaaatctcaacgttcggtgtgttgcaatta
aggggcgctataaaagacgcaggcagatgtctccaaattaagtttgagacattaaacaac
gtgtgcgcggctctgccaacatctccgcgcgttaaagttaccaactcgatgttgctagcg
tgttgcgcaaaagcgctaataccacagcatgttgcaatcgagctaatcgccacagcccaa
aagctcgtgggcgtgtacagacacgtgggcacccacgctgctggcgtggttataagcaat
tcgccgttagccgatcaagtgcctgtggtttgagacagccaaaataagattaatgtaacc
caatacaatatgggctgagtagacgctgccggtttaccaaagtttgatttgctcggactc
aaaacattaactgttgtgggcggcgtgttagagctgttagcaatcatcgggatcgagcca
aacattaactttaaagacgaaaaaacttacagtttcataggccgagggctgctgttagcc
acctttcagctggaaagcgagggcataactaaacacgttaagcacatgaagccatcaagc
ttaaacgatctggctgcgcttatagcgttgtatagaccgggacctatacagcaaattaaa
ttgtattccgatataaaacatggtcgcgccaagcgcgccaaaatacatagcaaaatagac
agtgtgctggacgacacatatggcataatagtttaccaagaacaggtgatgttgatagct
caagcgctatcaggatattcgctgattgaagcagacgagttaaggaaggctatggcaaag
aaaaacaaatccgaaatgttggctcacaccaaaaggtttatcgacggcgccgtcgcaaac
ggcgttgataagcggctggcggcgggagtgtttgaaacgttggtacgctttgcggactat
ggttttaacaaatcgcacgccgtggcttacgccatgctagcgtacacaactgcgtattta
aaatgcaactttacgttagagttctatgccgtttgccttacggtcgaaacaaacgaagcg
aatgagattaccgatttgtattacgaagcgttagagctcgaagtggaatttgcacagcct
agtgtgcaaacgccttataacgagttcaaaattattaatagcgttattcagtttccgctg
agcgcgattaagaacgtgccgcaaacggcgattagtagcatagcagcctctaaagcaaac
aagccgttcgctagtttaacagacttttgctgtaagtgcgactcaaaactaataactgaa
aacgtgctcaggtcgcttattctcggcggcgcgttcgattgctttcaactgtctagagcc
aaaatgatatcaaatttgaaactaatacaagactgcatcaatctcaaaaccgacattagc
ctgatcgcgttagattattgcgaacctgagctcgaaacgctttacagcgagtactgtctt
atcggctgcttcgtttcggaaaaccccatagacagattcacgtgcgagtgccagagcggt
tttgagctagcggtagttgtagcccaaacaaagaccacattaatgcttgtgctcagaaca
caccgacttgaagtttccaccgatatcgattaccctttgcagttagggcaagtgtatgct
tgcgagatcgtgcacattcggtctaaaccagtgtgtaaacgcctctatcaggtctaa
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