Helicobacter cetorum MIT 99-5656: HCD_03945
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Entry
HCD_03945 CDS
T02033
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hcm
Helicobacter cetorum MIT 99-5656
Pathway
hcm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCD_03945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcm03021
]
HCD_03945
03400 DNA repair and recombination proteins [BR:
hcm03400
]
HCD_03945
Enzymes [BR:
hcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCD_03945
Transcription machinery [BR:
hcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCD_03945
DNA repair and recombination proteins [BR:
hcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCD_03945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Enkurin
Myb_DNA-bind_4
Motif
Other DBs
NCBI-ProteinID:
AFI05803
UniProt:
I0ES84
LinkDB
All DBs
Position
complement(834127..835161)
Genome browser
AA seq
344 aa
AA seq
DB search
MKFIKTAPLIPSEIKVLEKEDNRVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPIGLK
IEGVHHEFDSLRGVTEDVSLFIMNLKNIRFIAKALAEENASQENQSVVVDYSFKGPMELR
ARDLVSEHVEIVNPEMPLATINEDTQLNFSLIIYKGMGYVPSENVRELMPESYMPLDCSF
TPIKNVVYDIENVLVEGDPNYEKIVFNIETDGQIDPYEAFLSAVKIMGKQLGVFGENPIT
NTDYSNDYTQKDDSKDLSAKIETMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMG
KKSYDEIAEKLNDLGYPVGTELSSEQKENLKKRLEKLEDKGGND
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttatcaaaacagcaccattgattccttcagaaatcaaggtgttagagaaagag
gataatcgggttaagatttctctagctccatttgagtttggctatgccgttacacttgct
catcctatcagaaggttattgcttttaagctctgtaggatatgcccctataggtttgaag
attgaaggcgttcatcatgagtttgactcattaaggggggtaactgaagatgtatctctc
tttataatgaacttaaaaaacattcgctttatagctaaggcgttagcagaggagaatgct
tctcaagagaaccagtcagttgtagtggattattcttttaagggacctatggagcttagg
gctagagatttagtttctgagcatgtagagatagtgaatcctgaaatgcccttagcaacg
atcaatgaagacactcaattgaatttttcactcattatctataagggaatgggttatgtg
ccaagtgagaatgtgagagaattgatgcctgagagttacatgcctttagattgttctttc
acgccgattaaaaatgtggtttatgatattgaaaatgttttggttgagggcgaccctaac
tatgaaaaaatcgtttttaatattgaaacagatgggcagattgacccttatgaagcgttt
ttatctgcagtaaagattatgggtaagcagctgggtgtttttggagagaatccaattact
aataccgattattcaaatgattacacacaaaaagatgactctaaagatttgagcgctaag
attgaaaccatgaatttgagtgctagatgttttaattgcttggataaaatcggtattaag
tatgtgggcgaactcgttttaatgagtgaagaagagcttaaaggcgtgaaaaacatgggc
aagaagtcctatgatgaaatcgcagaaaaactaaatgatttaggctatcctgtaggcaca
gaattaagctctgaacaaaaagaaaatttaaagaaaagattagaaaaattagaagataag
ggaggcaacgactga
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